Chen Xin, He Yan-Qiu, Miao Ti-Wei, Yin Jie, Liu Jie, Zeng Hong-Ping, Zhu Qi
Department of Integrated Traditional Chinese and Western Medicine, Zigong First People's Hospital, Zigong, People's Republic of China.
School of Automation & Information Engineering, Sichuan University of Science & Engineering, Zigong, People's Republic of China.
Int J Gen Med. 2023 Dec 13;16:5889-5908. doi: 10.2147/IJGM.S439190. eCollection 2023.
Non-small cell lung cancer (NSCLC) accounts for the majority of lung cancer cases. Immediate early response 5 like () plays crucial roles in progression and prognosis for several tumors, but its role in NSCLC remains unclear.
Gene expression and mutation profiles, DNA methylation data, and clinical information for cancers were downloaded from multiple databases. Relative expression, prognostic value, and correlation with disease progression of were analyzed in multiple cancers, including NSCLC. Upstream mechanisms were explored using a transcriptional network. Functional enrichment analysis, protein-protein interaction network, and gene set enrichment analysis were applied to study downstream mechanisms. Correlations of with immune infiltration, immune molecules, methylation status, and tumor mutation burden (TMB) were analyzed using R language. Finally, quantitative polymerase chain reaction (qPCR) and single-cell RNA sequencing (scRNA seq) analysis were performed to validate expression in NSCLC.
Pan-cancer analysis displayed that expression was upregulated in multiple cancers and was associated with disease prognosis and progression, including NSCLC, which was validated using qPCR. scRNA seq analysis showed that multiple cells had increased expression. An -hsa-miR-8075- network was constructed for NSCLC. A total of 191 DEGs were identified between the two groups, which were significantly enriched in biological process of action potential, sodium ion transport, and regulation of membrane potential. Increased expression was primarily enriched in cell cycle, NOTCH signaling pathway, and oxidative phosphorylation pathway, and was correlated with increased regulatory T cells and neutrophils, elevated levels of immune molecules, and higher TMB.
Our findings show that increased expression was correlated with progression and prognosis in multiple cancers as well as with immune infiltration and immune molecules in NSCLC. Thus, is a prognostic biomarker in multiple cancers and may correlate with immunotherapeutic response in NSCLC.
非小细胞肺癌(NSCLC)占肺癌病例的大多数。立即早期反应5样蛋白()在多种肿瘤的进展和预后中起关键作用,但其在NSCLC中的作用仍不清楚。
从多个数据库下载癌症的基因表达和突变谱、DNA甲基化数据及临床信息。在包括NSCLC在内的多种癌症中分析的相对表达、预后价值及其与疾病进展的相关性。使用转录网络探索上游机制。应用功能富集分析、蛋白质-蛋白质相互作用网络和基因集富集分析来研究下游机制。使用R语言分析与免疫浸润、免疫分子、甲基化状态和肿瘤突变负荷(TMB)的相关性。最后,进行定量聚合酶链反应(qPCR)和单细胞RNA测序(scRNA seq)分析以验证在NSCLC中的表达。
泛癌分析显示,在多种癌症中表达上调,且与疾病预后和进展相关,包括NSCLC,这通过qPCR得到验证。scRNA seq分析表明多个细胞的表达增加。构建了NSCLC的-hsa-miR-8075-网络。在两组之间共鉴定出191个差异表达基因(DEG),它们在动作电位、钠离子转运和膜电位调节的生物学过程中显著富集。表达增加主要富集在细胞周期、NOTCH信号通路和氧化磷酸化途径中,并且与调节性T细胞和中性粒细胞增加、免疫分子水平升高以及更高的TMB相关。
我们的研究结果表明,表达增加与多种癌症的进展和预后相关,以及与NSCLC中的免疫浸润和免疫分子相关。因此,是多种癌症的预后生物标志物,并且可能与NSCLC中的免疫治疗反应相关。