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在中国奶牛源的两株大肠杆菌 ST1508 菌株的质粒中共同携带 bla、bla 和 bla 的Tn3-like 结构。

Tn3-like structures co-harboring of bla, bla and bla in the plasmids of two Escherichia coli ST1508 strains originating from dairy cattle in China.

机构信息

Key Laboratory of New Animal Drug Project of Gansu Province, Lanzhou, Gansu Province, 730050, People's Republic of China.

Key Laboratory of Veterinary Pharmaceutical Development, Ministry of Agriculture, Lanzhou, Gansu Province, 730050, People's Republic of China.

出版信息

BMC Vet Res. 2023 Dec 18;19(1):279. doi: 10.1186/s12917-023-03847-2.

Abstract

The purpose of this study was to determine the level of horizontal transmission of the bla gene and the role of its associated mobile genetic elements (MGEs) in the bovine-derived Escherichia coli. After PCR identification, two plasmids carrying bla were successfully transferred to the recipient E. coli J53 Azr through conjugation assays and subsequently selected for Whole-Genome sequencing (WGS) analysis. The resistance profiles of these two positive strains and their transconjugants were also determined through antimicrobial susceptibility tests. Whole genome data were acquired using both the PacBio sequencing platform and the Illumina data platform. The annotated results were then submitted to the Genbank database for accession number recording. For comparison, the genetic environment of plasmids carrying the resistance gene bla was mapped using the Easyfig software. WGS analysis revealed Tn3-like composite transposons bearing bla, bla, and bla in the IncHI2-type plasmids of these two E. coli ST1508 strains. A phylogenetic tree was generated from all 48 assembled E. coli isolates bla, bla, and bla from the NCBI Pathogen Detection database with our two isolates, showing the relationships and the contribution of SNPs to the diversity between genetic samples. This study suggests that the transmissibility of bla on Tn3-like composite transposons contributes to an increased risk of its transmission in E. coli derived from dairy cattle.

摘要

本研究旨在确定 bla 基因的水平传播程度及其相关移动遗传元件(MGEs)在牛源大肠杆菌中的作用。经过 PCR 鉴定,成功地通过接合试验将两个携带 bla 的质粒转移到受体大肠杆菌 J53 Azr 中,并随后选择进行全基因组测序(WGS)分析。通过药敏试验还确定了这两个阳性株及其转导子的耐药谱。使用 PacBio 测序平台和 Illumina 数据平台获取全基因组数据。注释结果随后提交给 Genbank 数据库以记录 accession number。为了进行比较,使用 Easyfig 软件对携带耐药基因 bla 的质粒的遗传环境进行了映射。WGS 分析显示,这两个大肠杆菌 ST1508 株的 IncHI2 型质粒中携带 bla、bla 和 bla 的 Tn3 样复合转座子。从 NCBI 病原体检测数据库中所有 48 个组装好的大肠杆菌 bla、bla 和 bla 分离株生成了一个系统发育树,包括我们的两个分离株,显示了遗传样本之间的关系和 SNPs 对多样性的贡献。本研究表明,Tn3 样复合转座子上 bla 的可传递性增加了其在牛源大肠杆菌中的传播风险。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/56bc/10729465/d7bd369eb399/12917_2023_3847_Fig1_HTML.jpg

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