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一组高危神经母细胞瘤肿瘤中的端粒维持机制及其与 和 基因中基因组变异的关系。

Telomere Maintenance Mechanisms in a Cohort of High-Risk Neuroblastoma Tumors and Its Relation to Genomic Variants in the and Genes.

作者信息

Djos Anna, Thombare Ketan, Vaid Roshan, Gaarder Jennie, Umapathy Ganesh, Reinsbach Susanne E, Georgantzi Kleopatra, Stenman Jakob, Carén Helena, Ek Torben, Mondal Tanmoy, Kogner Per, Martinsson Tommy, Fransson Susanne

机构信息

Department of Laboratory Medicine, Institute of Biomedicine, Sahlgrenska Academy, University of Gothenburg, 40530 Gothenburg, Sweden.

Department of Clinical Genetics and Genomics, Sahlgrenska University Hospital, 41345 Gothenburg, Sweden.

出版信息

Cancers (Basel). 2023 Dec 7;15(24):5732. doi: 10.3390/cancers15245732.

Abstract

Tumor cells are hallmarked by their capacity to undergo unlimited cell divisions, commonly accomplished either by mechanisms that activate or through the alternative lengthening of telomeres pathway. Neuroblastoma is a heterogeneous pediatric cancer, and the aim of this study was to characterize telomere maintenance mechanisms in a high-risk neuroblastoma cohort. All tumor samples were profiled with SNP microarrays and, when material was available, subjected to whole genome sequencing (WGS). Telomere length was estimated from WGS data, samples were assayed for the ALT biomarker c-circles, and selected samples were subjected to methylation array analysis. Samples with aberration in this study were positive for c-circles, whereas samples with either amplification or re-arrangement were negative for c-circles. Both aberrations and re-arrangement were enriched in 11q-deleted samples. An association between older age at diagnosis and 1q-deletion was found in the ALT-positive group. was frequently placed in juxtaposition to a previously established gene in neuroblastoma tumorigenesis or cancer in general. Given the importance of high-risk neuroblastoma, means for mitigating active telomere maintenance must be therapeutically explored.

摘要

肿瘤细胞的特征在于其具有进行无限细胞分裂的能力,这通常通过激活机制或通过端粒延长替代途径来实现。神经母细胞瘤是一种异质性儿童癌症,本研究的目的是在高危神经母细胞瘤队列中表征端粒维持机制。所有肿瘤样本均用SNP微阵列进行分析,如有可用材料,则进行全基因组测序(WGS)。从WGS数据估计端粒长度,对样本进行ALT生物标志物c-环检测,并对选定样本进行甲基化阵列分析。本研究中存在畸变的样本c-环呈阳性,而存在扩增或重排的样本c-环呈阴性。11q缺失样本中畸变和重排均富集。在ALT阳性组中发现诊断时年龄较大与1q缺失之间存在关联。在神经母细胞瘤肿瘤发生或一般癌症中,经常与先前确立的基因并列。鉴于高危神经母细胞瘤的重要性,必须从治疗上探索减轻活跃端粒维持的方法。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/49d4/10741428/f842f45a6a58/cancers-15-05732-g001.jpg

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