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通过整合生物信息学工具和功能测定,从基因组聚集数据库中探索细胞色素 P450 还原酶基因 () 的新型变异体。

Exploring Novel Variants of the Cytochrome P450 Reductase Gene () from the Genome Aggregation Database by Integrating Bioinformatic Tools and Functional Assays.

机构信息

Division of Pediatric Endocrinology, Department of Pediatrics, University Children's Hospital Bern, 3010 Bern, Switzerland.

Translational Hormone Research, Department of Biomedical Research, University of Bern, 3010 Bern, Switzerland.

出版信息

Biomolecules. 2023 Nov 30;13(12):1728. doi: 10.3390/biom13121728.

DOI:10.3390/biom13121728
PMID:38136599
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10741880/
Abstract

Cytochrome P450 oxidoreductase (POR) is an essential redox partner for steroid and drug-metabolizing cytochromes P450 located in the endoplasmic reticulum. Mutations in lead to metabolic disorders, including congenital adrenal hyperplasia, and affect the metabolism of steroids, drugs, and xenobiotics. In this study, we examined approximately 450 missense variants of the gene listed in the Genome Aggregation Database (gnomAD) using eleven different in silico prediction tools. We found that 64 novel variants were consistently predicted to be disease-causing by most tools. To validate our findings, we conducted a population analysis and selected two variations in for further investigation. The human POR wild type and the R268W and L577P variants were expressed in bacteria and subjected to enzyme kinetic assays using a model substrate. We also examined the activities of several cytochrome P450 proteins in the presence of POR (WT or variants) by combining P450 and reductase proteins in liposomes. We observed a decrease in enzymatic activities (ranging from 35% to 85%) of key drug-metabolizing enzymes, supported by POR variants R288W and L577P compared to WT-POR. These results validate our approach of curating a vast amount of data from genome projects and provide an updated and reliable reference for diagnosing POR deficiency.

摘要

细胞色素 P450 氧化还原酶(POR)是位于内质网中的类固醇和药物代谢细胞色素 P450 的必需氧化还原伴侣。 突变导致代谢紊乱,包括先天性肾上腺增生,并影响类固醇、药物和外源性化合物的代谢。 在这项研究中,我们使用 11 种不同的计算预测工具检查了基因组聚集数据库(gnomAD)中列出的约 450 种 基因的错义变体。 我们发现,大多数工具一致预测 64 种新型变体为致病变体。 为了验证我们的发现,我们进行了人群分析,并选择了 中的两个变体进行进一步研究。 人 POR 野生型和 R268W 和 L577P 变体在细菌中表达,并使用模型底物进行酶动力学测定。 我们还通过将 P450 和还原酶蛋白在脂质体中组合,在存在 POR(WT 或变体)的情况下检查了几种细胞色素 P450 蛋白的活性。 与 WT-POR 相比,我们观察到关键药物代谢酶的酶活性(范围为 35%至 85%)降低,这得到了 POR 变体 R288W 和 L577P 的支持。 这些结果验证了我们从基因组项目中整理大量数据的方法,并为 POR 缺乏症的诊断提供了更新和可靠的参考。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38dc/10741880/326826bf3fda/biomolecules-13-01728-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38dc/10741880/75abd0e3be05/biomolecules-13-01728-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38dc/10741880/54bc5079db6e/biomolecules-13-01728-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38dc/10741880/0b9edc1b2340/biomolecules-13-01728-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38dc/10741880/e2ea4e3507ee/biomolecules-13-01728-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38dc/10741880/89e288bb9880/biomolecules-13-01728-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38dc/10741880/85ff6a289d32/biomolecules-13-01728-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38dc/10741880/326826bf3fda/biomolecules-13-01728-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38dc/10741880/75abd0e3be05/biomolecules-13-01728-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38dc/10741880/54bc5079db6e/biomolecules-13-01728-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38dc/10741880/0b9edc1b2340/biomolecules-13-01728-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38dc/10741880/e2ea4e3507ee/biomolecules-13-01728-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38dc/10741880/89e288bb9880/biomolecules-13-01728-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38dc/10741880/85ff6a289d32/biomolecules-13-01728-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38dc/10741880/326826bf3fda/biomolecules-13-01728-g007.jpg

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Variant interpretation using population databases: Lessons from gnomAD.
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