Kan Yongtao, Zhang Li, Wang Yan, Ma Qingyun, Zhou Yiqing, Jiang Xu, Zhang Wei, Ruan Zhiyong
College of Life Sciences, Xinjiang Normal University, Urumqi 830017, China.
State Key Laboratory of Efficient Utilization of Arid and Semi-Arid Arable Land in Northern China, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing 100081, China.
Microorganisms. 2023 Nov 30;11(12):2899. doi: 10.3390/microorganisms11122899.
Strain Q11 of an irregular coccoid Gram-positive bacterium, aerobic and non-motile, was isolated from seeds. Strain Q11 grew optimally in 1% (/) NaCl, pH 7, at 30 °C. Strain Q11 is most closely related to , as evidenced by 16S rRNA gene analysis, and shares the highest similarity with ID2601S (99.24%). Based on genome sequence analysis, the average nucleotide identity and digital DNA-DNA hybridization values of strains Q11 and D2601S were 88.82% and 36.20%, respectively. Additionally, strain Q11 showed the abilities of nitrogen fixation and indole acetic acid production and was shown to promote maize growth under laboratory conditions. Its genome contains antibiotic resistance genes (the vanY gene in the vanB cluster and the vanW gene in the vanI cluster) and extreme environment tolerance genes (ectoine biosynthetic gene cluster). Shotgun proteomics also detected antibiotic resistance proteins (class A beta-lactamases, D-alanine ligase family proteins) and proteins that improve plant cold tolerance (multispecies cold shock proteins). Strain Q11 was determined to be a novel species of the genus , for which the name sp. nov. is proposed. The strain type is Q11 (GDMCC 1.3002 = JCM 36020 ).
从种子中分离出一株不规则球状革兰氏阳性菌Q11,需氧且无运动性。菌株Q11在1%(/)NaCl、pH 7、30°C条件下生长最佳。16S rRNA基因分析表明,菌株Q11与[具体菌株名称未给出]关系最为密切,与ID2601S的相似度最高(99.24%)。基于基因组序列分析,菌株Q11和D2601S的平均核苷酸同一性和数字DNA - DNA杂交值分别为88.82%和36.20%。此外,菌株Q11具有固氮和吲哚乙酸产生能力,在实验室条件下能促进玉米生长。其基因组包含抗生素抗性基因(vanB簇中的vanY基因和vanI簇中的vanW基因)和极端环境耐受性基因(ectoine生物合成基因簇)。鸟枪法蛋白质组学还检测到抗生素抗性蛋白(A类β-内酰胺酶、D-丙氨酸连接酶家族蛋白)和提高植物耐寒性的蛋白(多种冷休克蛋白)。菌株Q11被确定为[属名未给出]属的一个新物种,为此提出新物种名称[具体名称未给出] sp. nov.。菌株模式为Q11(GDMCC 1.3002 = JCM 36020 ) 。