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在欧洲的 HIV-1 传播集群中晚期出现者的作用。

The Role of Late Presenters in HIV-1 Transmission Clusters in Europe.

机构信息

Global Health and Tropical Medicine (GHTM), Associate Laboratory in Translation and Innovation towards Global Health (LA-REAL), Institute of Hygiene and Tropical Medicine, New University of Lisbon (IHMT/UNL), 1349-008 Lisbon, Portugal.

Laboratório de Biologia Molecular (LMCBM, SPC, CHLO-HEM), 1349-019 Lisbon, Portugal.

出版信息

Viruses. 2023 Dec 13;15(12):2418. doi: 10.3390/v15122418.

Abstract

BACKGROUND

Investigating the role of late presenters (LPs) in HIV-1 transmission is important, as they can contribute to the onward spread of HIV-1 virus before diagnosis, when they are not aware of their HIV status.

OBJECTIVE

To characterize individuals living with HIV-1 followed up in Europe infected with subtypes A, B, and G and to compare transmission clusters (TC) in LP vs. non-late presenter (NLP) populations.

METHODS

Information from a convenience sample of 2679 individuals living with HIV-1 was collected from the EuResist Integrated Database between 2008 and 2019. Maximum likelihood (ML) phylogenies were constructed using FastTree. Transmission clusters were identified using Cluster Picker. Statistical analyses were performed using R.

RESULTS

2437 (91.0%) sequences were from subtype B, 168 (6.3%) from subtype A, and 74 (2.8%) from subtype G. The median age was 39 y/o (IQR: 31.0-47.0) and 85.2% of individuals were males. The main transmission route was via homosexual (MSM) contact (60.1%) and 85.0% originated from Western Europe. In total, 54.7% of individuals were classified as LPs and 41.7% of individuals were inside TCs. In subtype A, individuals in TCs were more frequently males and natives with a recent infection. For subtype B, individuals in TCs were more frequently individuals with MSM transmission route and with a recent infection. For subtype G, individuals in TCs were those with a recent infection. When analyzing cluster size, we found that LPs more frequently belonged to small clusters (<8 individuals), particularly dual clusters (2 individuals).

CONCLUSION

LP individuals are more present either outside or in small clusters, indicating a limited role of late presentation to HIV-1 transmission.

摘要

背景

研究 HIV-1 晚期患者(LPs)在 HIV-1 传播中的作用很重要,因为他们在未意识到自身 HIV 状况时,可能会在诊断前继续传播 HIV-1 病毒。

目的

描述在欧洲感染 HIV-1 病毒的 A、B、G 亚型的个体,并比较 LP 与非晚期患者(NLP)人群中的传播簇(TC)。

方法

从 2008 年至 2019 年,从 EuResist 综合数据库中收集了 2679 名 HIV-1 感染者的便利样本信息。使用 FastTree 构建最大似然(ML)系统发育树。使用 Cluster Picker 识别传播簇。使用 R 进行统计分析。

结果

2437 个(91.0%)序列来自 B 亚型,168 个(6.3%)来自 A 亚型,74 个(2.8%)来自 G 亚型。中位数年龄为 39 岁(IQR:31.0-47.0),85.2%的患者为男性。主要传播途径为男同性恋(MSM)接触(60.1%),85.0%来自西欧。共有 54.7%的患者被归类为 LP,41.7%的患者位于 TC 中。在 A 亚型中,TC 中的个体更常为男性和近期感染者。对于 B 亚型,TC 中的个体更常为 MSM 传播途径和近期感染者。对于 G 亚型,TC 中的个体为近期感染者。在分析簇大小后,我们发现 LP 更常属于小簇(<8 人),尤其是双簇(2 人)。

结论

LP 个体更多地处于或存在于小簇中,表明晚期出现对 HIV-1 传播的作用有限。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f5cc/10746990/cd4354aa9ad9/viruses-15-02418-g001.jpg

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