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癌症相关成纤维细胞的分子分类在泛癌单细胞转录图谱上。

The molecular classification of cancer-associated fibroblasts on a pan-cancer single-cell transcriptional atlas.

机构信息

Department of Anatomical and Cellular Pathology, State Key Laboratory of Translational Oncology, Sir Y.K. Pao Cancer Center, The Chinese University of Hong Kong, Hong Kong, China.

Institute of Digestive Disease, State Key Laboratory of Digestive Disease, Li Ka Shing Institute of Health Science, The Chinese University of Hong Kong, Hong Kong, China.

出版信息

Clin Transl Med. 2023 Dec;13(12):e1516. doi: 10.1002/ctm2.1516.


DOI:10.1002/ctm2.1516
PMID:38148640
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10751516/
Abstract

BACKGROUND: Cancer-associated fibroblasts (CAFs), integral to the tumour microenvironment, are pivotal in cancer progression, exhibiting either pro-tumourigenic or anti-tumourigenic functions. Their inherent phenotypic and functional diversity allows for the subdivision of CAFs into various subpopulations. While several classification systems have been suggested for different cancer types, a unified molecular classification of CAFs on a single-cell pan-cancer scale has yet to be established. METHODS: We employed a comprehensive single-cell transcriptomic atlas encompassing 12 solid tumour types. Our objective was to establish a novel molecular classification and to elucidate the evolutionary trajectories of CAFs. We investigated the functional profiles of each CAF subtype using Single-Cell Regulatory Network Inference and Clustering and single-cell gene set enrichment analysis. The clinical relevance of these subtypes was assessed through survival curve analysis. Concurrently, we employed multiplex immunofluorescence staining on tumour tissues to determine the dynamic changes of CAF subtypes across different tumour stages. Additionally, we identified the small molecule procyanidin C1 (PCC1) as a target for matrix-producing CAF (matCAF) using molecular docking techniques and further validated these findings through in vitro and in vivo experiments. RESULTS: In our investigation of solid tumours, we identified four molecular clusters of CAFs: progenitor CAF (proCAF), inflammatory CAF (iCAF), myofibroblastic CAF (myCAF) and matCAF, each characterised by distinct molecular traits. This classification was consistently applicable across all nine studied solid tumour types. These CAF subtypes displayed unique evolutionary pathways, functional roles and clinical relevance in various solid tumours. Notably, the matCAF subtype was associated with poorer prognoses in several cancer types. The targeting of matCAF using the identified small molecule, PCC1, demonstrated promising antitumour activity. CONCLUSIONS: Collectively, the various subtypes of CAFs, particularly matCAF, are crucial in the initiation and progression of cancer. Focusing therapeutic strategies on targeting matCAF in solid tumours holds significant potential for cancer treatment.

摘要

背景:癌症相关成纤维细胞(CAFs)是肿瘤微环境的重要组成部分,在癌症进展中起着关键作用,表现出促肿瘤或抑肿瘤的功能。它们固有的表型和功能多样性使得 CAFs 可以细分为各种亚群。虽然已经提出了几种用于不同癌症类型的分类系统,但尚未在单细胞泛癌水平上建立 CAF 的统一分子分类。

方法:我们采用了一个包含 12 种实体瘤类型的全面单细胞转录组图谱。我们的目标是建立一种新的分子分类,并阐明 CAFs 的进化轨迹。我们使用单细胞调控网络推断和聚类以及单细胞基因集富集分析来研究每个 CAF 亚型的功能特征。通过生存曲线分析评估这些亚型的临床相关性。同时,我们在肿瘤组织上使用多色免疫荧光染色来确定不同肿瘤阶段 CAF 亚型的动态变化。此外,我们使用分子对接技术鉴定了小分子原花青素 C1(PCC1)作为基质产生 CAF(matCAF)的靶标,并通过体外和体内实验进一步验证了这些发现。

结果:在我们对实体瘤的研究中,我们鉴定出了 CAFs 的四个分子簇:祖 CAF(proCAF)、炎性 CAF(iCAF)、肌成纤维 CAF(myCAF)和 matCAF,每个簇都具有独特的分子特征。这种分类在所有 9 种研究的实体瘤类型中都是一致适用的。这些 CAF 亚型在各种实体瘤中表现出独特的进化途径、功能作用和临床相关性。值得注意的是,matCAF 亚型与几种癌症类型的预后较差相关。使用鉴定出的小分子 PCC1 靶向 matCAF 显示出有希望的抗肿瘤活性。

结论:总的来说,各种 CAF 亚型,特别是 matCAF,在癌症的发生和发展中至关重要。将治疗策略集中在靶向实体瘤中的 matCAF 上,为癌症治疗提供了巨大的潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8fff/10751516/302a63747e98/CTM2-13-e1516-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8fff/10751516/8428bf9a0cff/CTM2-13-e1516-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8fff/10751516/5990b48cc6b9/CTM2-13-e1516-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8fff/10751516/0dba9c81566f/CTM2-13-e1516-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8fff/10751516/3baf318b853d/CTM2-13-e1516-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8fff/10751516/10c2e09a3105/CTM2-13-e1516-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8fff/10751516/d1e9a783fe73/CTM2-13-e1516-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8fff/10751516/302a63747e98/CTM2-13-e1516-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8fff/10751516/8428bf9a0cff/CTM2-13-e1516-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8fff/10751516/5990b48cc6b9/CTM2-13-e1516-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8fff/10751516/0dba9c81566f/CTM2-13-e1516-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8fff/10751516/3baf318b853d/CTM2-13-e1516-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8fff/10751516/10c2e09a3105/CTM2-13-e1516-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8fff/10751516/d1e9a783fe73/CTM2-13-e1516-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8fff/10751516/302a63747e98/CTM2-13-e1516-g005.jpg

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本文引用的文献

[1]
Procyanidin C1 inhibits tumor growth and metastasis in colon cancer via modulating miR-501-3p/HIGD1A axis.

J Adv Res. 2024-6

[2]
The E2F1-HOXB9/PBX2-CDK6 axis drives gastric tumorigenesis and serves as a therapeutic target in gastric cancer.

J Pathol. 2023-8

[3]
NNMT enriches for AQP5 cancer stem cells to drive malignant progression in early gastric cardia adenocarcinoma.

Gut. 2023-12-7

[4]
CD36 Fibroblasts Secrete Protein Ligands That Growth-Suppress Triple-Negative Breast Cancer Cells While Elevating Adipogenic Markers for a Model of Cancer-Associated Fibroblast.

Int J Mol Sci. 2022-10-22

[5]
Pan-cancer single-cell analysis reveals the heterogeneity and plasticity of cancer-associated fibroblasts in the tumor microenvironment.

Nat Commun. 2022-11-4

[6]
Single cell analysis of cribriform prostate cancer reveals cell intrinsic and tumor microenvironmental pathways of aggressive disease.

Nat Commun. 2022-10-13

[7]
CREB3L1 promotes tumor growth and metastasis of anaplastic thyroid carcinoma by remodeling the tumor microenvironment.

Mol Cancer. 2022-10-3

[8]
Hypoxia promotes an inflammatory phenotype of fibroblasts in pancreatic cancer.

Oncogenesis. 2022-9-15

[9]
Temporal profiling of the breast tumour microenvironment reveals collagen XII as a driver of metastasis.

Nat Commun. 2022-8-6

[10]
Oncogenic collagen I homotrimers from cancer cells bind to α3β1 integrin and impact tumor microbiome and immunity to promote pancreatic cancer.

Cancer Cell. 2022-8-8

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