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m6a 通过调节免疫细胞修饰和调节与衰老相关的基因,在颈动脉粥样硬化中发挥潜在作用。

M6A plays a potential role in carotid atherosclerosis by modulating immune cell modification and regulating aging-related genes.

机构信息

Department of Vascular Surgery, The Second Affiliated Hospital of Nanchang University, Jiangxi Medical College, Nanchang University, No. 1 Minde Road, Nanchang, 330006, Jiangxi Province, China.

Queen Mary College, Nanchang University, Nanchang, 330031, Jiangxi, China.

出版信息

Sci Rep. 2024 Jan 2;14(1):60. doi: 10.1038/s41598-023-50557-8.

Abstract

RNA N6-methyladenosine (m6A) regulators play essential roles in diverse biological processes, including immune responses. Mounting evidence suggests that their dysregulation is intricately linked to numerous diseases. However, the role of m6A-associated genes in carotid atherosclerosis and their relationship with aging and immune cells remain unclear. Analyze the expression profiles of m6A-related genes in carotid atherosclerosis-related datasets. Based on the expression patterns of m6A-related genes, perform consistent clustering analysis of carotid atherosclerosis samples and investigate associated immune cell infiltration patterns and aging characteristics. Develop an m6A prediction model specific to carotid atherosclerosis and analyze the relationships between immune cells infiltration and aging features. The m6A methylation modification level exhibited a substantial decrease in early-stage carotid atherosclerosis samples compared to late-stage carotid atherosclerosis samples. Subsequently, two distinct m6A subtypes were defined through consensus clustering analysis, with the lower m6A modification level group showing associations with heightened immune cell infiltration and increased expression of aging-related genes. A model composed of five m6A-related genes was formulated, and the results indicated that this model possesses effective predictive and therapeutic capabilities for carotid atherosclerosis. Furthermore, the downregulation of YTHDC1 expression resulted in elevated expression of inflammatory factors and a decrease in the expression of the aging-related gene RGN. Single-cell data analysis suggests that the reduced expression of YTHDC1 may decrease the degradation of inflammation-related factors in macrophages, leading to a highly inflammatory state in the carotid artery wall. Furthermore, the sustained release of inflammatory factors may increase the expression of the aging-related gene RGN in vascular smooth muscle cells, further exacerbating the progression of atherosclerosis. A reduced level of m6A methylation modification could enhance inflammation and expedite cellular aging, thereby contributing to the development of carotid atherosclerosis.

摘要

RNA N6-甲基腺苷(m6A)调节剂在包括免疫反应在内的各种生物过程中发挥着重要作用。越来越多的证据表明,它们的失调与许多疾病密切相关。然而,m6A 相关基因在颈动脉粥样硬化中的作用及其与衰老和免疫细胞的关系尚不清楚。分析与颈动脉粥样硬化相关的数据集的 m6A 相关基因的表达谱。基于 m6A 相关基因的表达模式,对颈动脉粥样硬化样本进行一致聚类分析,并研究相关免疫细胞浸润模式和衰老特征。开发一种特定于颈动脉粥样硬化的 m6A 预测模型,并分析免疫细胞浸润与衰老特征之间的关系。与晚期颈动脉粥样硬化样本相比,早期颈动脉粥样硬化样本的 m6A 甲基化修饰水平显著降低。随后,通过共识聚类分析定义了两种不同的 m6A 亚型,低 m6A 修饰水平组与免疫细胞浸润增加和衰老相关基因表达增加相关。构建了一个由五个 m6A 相关基因组成的模型,结果表明该模型对颈动脉粥样硬化具有有效的预测和治疗能力。此外,YTHDC1 表达下调导致炎症因子表达升高和衰老相关基因 RGN 表达降低。单细胞数据分析表明,YTHDC1 的表达下调可能会降低巨噬细胞中炎症相关因子的降解,导致颈动脉壁处于高度炎症状态。此外,炎症因子的持续释放可能会增加血管平滑肌细胞中衰老相关基因 RGN 的表达,进一步加剧动脉粥样硬化的进展。m6A 甲基化修饰水平降低可能会增强炎症反应并加速细胞衰老,从而促进颈动脉粥样硬化的发展。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ab91/10761844/994558c36d47/41598_2023_50557_Fig1_HTML.jpg

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