Suppr超能文献

血小板相关基因在缺血性脑卒中患者中的分析及调控机制。

Analysis and Regulatory Mechanisms of Platelet-Related Genes in Patients with Ischemic Stroke.

机构信息

Department of Neurology, Affiliated Hospital of Guizhou Medical University, Guiyang, 550004, China.

Department of Neurology, Guizhou Medical University, Guiyang, 550004, China.

出版信息

Cell Mol Neurobiol. 2024 Jan 4;44(1):15. doi: 10.1007/s10571-023-01433-6.

Abstract

It was found that ischemic stroke (IS) was associated with abnormal platelet activity and thrombosis. However, the potential significance of platelet-related genes (PRGs) in IS still needs to be more thorough. This study extracted IS-related transcriptome datasets from the Gene Expression Omnibus (GEO) database. The target genes were obtained by intersecting the differentially expressed genes (DEGs), the module genes related to IS, and PRGs, where the key genes of IS were screened by two machine learning algorithms. The key genes-based diagnostic model was constructed. Gene set enrichment analysis (GSEA) and the immune microenvironment analyses were analyzed targeting key genes in IS. The co-expression, TF-mRNA, and competitive endogenous RNAs (ceRNA) regulatory networks were constructed to reveal the potential regulation of key genes. Potential drugs targeting key genes were predicted as well. Totals of eight target genes were obtained and were associated with immune-related functions. Four platelet-related key genes were acquired, which were related to immunity and energy metabolism. The abnormal expressions of DOCK8, GIMAP5, ICOS were determined by the quantitative real-time polymerase chain reaction (qRT-PCR), and the significant correlations among these key genes were identified. Notably, hsa-miR-17-3p, hsa-miR-3158-3p, hsa-miR-423-3p, and hsa-miR-193a-8p could regulate all key genes at the same time. In addition, Caffeine, Carboplatin, and Vopratelimab were the targeted drugs of these key genes. This study identified four platelet-related key genes of IS, which might help to deepen the understanding of the role of platelet-related genes in the molecular mechanism of IS.

摘要

研究发现,缺血性脑卒中(IS)与血小板活性异常和血栓形成有关。然而,血小板相关基因(PRGs)在 IS 中的潜在意义仍需要更深入的研究。本研究从基因表达综合数据库(GEO)中提取了与 IS 相关的转录组数据集。通过将差异表达基因(DEGs)、与 IS 相关的模块基因和 PRGs 进行交集,获得了目标基因,然后使用两种机器学习算法筛选 IS 的关键基因。构建了基于关键基因的诊断模型。针对 IS 中的关键基因进行了基因集富集分析(GSEA)和免疫微环境分析。构建了共表达、TF-mRNA 和竞争性内源性 RNA(ceRNA)调控网络,以揭示关键基因的潜在调控作用。还预测了针对关键基因的潜在药物。总共获得了 8 个与免疫相关功能相关的靶基因。获得了 4 个与血小板相关的关键基因,它们与免疫和能量代谢有关。通过定量实时聚合酶链反应(qRT-PCR)确定了 DOCK8、GIMAP5 和 ICOS 的异常表达,并鉴定了这些关键基因之间的显著相关性。值得注意的是,hsa-miR-17-3p、hsa-miR-3158-3p、hsa-miR-423-3p 和 hsa-miR-193a-8p 可以同时调控所有关键基因。此外,咖啡因、卡铂和 Vopratelimab 是这些关键基因的靶向药物。本研究鉴定了 IS 中与血小板相关的 4 个关键基因,这可能有助于加深对血小板相关基因在 IS 分子机制中作用的理解。

相似文献

本文引用的文献

1
Estimated Burden of Stroke in China in 2020.2020 年中国脑卒中发病与死亡负担估计。
JAMA Netw Open. 2023 Mar 1;6(3):e231455. doi: 10.1001/jamanetworkopen.2023.1455.
7
Comparison of ischemic stroke diagnosis models based on machine learning.基于机器学习的缺血性中风诊断模型比较
Front Neurol. 2022 Dec 5;13:1014346. doi: 10.3389/fneur.2022.1014346. eCollection 2022.

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验