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透明细胞肾细胞癌中血管生成拟态的分类揭示了其与临床及免疫特征的内在联系。

The categorizations of vasculogenic mimicry in clear cell renal cell carcinoma unveil inherent connections with clinical and immune features.

作者信息

Geng Bo, Liu Weiyang, Wang Jinpeng, Zhang Wei, Li Zhuolun, Zhang Nan, Hou Wenbin, Zhao Enyang, Li Xuedong, You Bosen

机构信息

Department of Urology, The Second Affiliated Hospital of Harbin Medical University, Harbin, China.

出版信息

Front Pharmacol. 2023 Dec 20;14:1333507. doi: 10.3389/fphar.2023.1333507. eCollection 2023.

Abstract

Clear cell renal cell carcinoma (ccRCC) stands as the prevailing variant kidney cancer in humans. Unfortunately, patients with disseminated RCC at diagnosis often have a diminished prognosis. Rapid tumor growth necessitates efficient blood supply for oxygen and nutrients, involving the circulation of blood from vessels to tumor tissues, facilitating tumor cell entry into the extracellular matrix. Vasculogenic mimicry (VM) significantly contributes to tumor growth and metastasis. Within this investigation, we identified vasculogenic mimicry-related genes (VMRGs) by analyzing data from 607 cases of kidney renal clear cell carcinoma (KIRC) in The Cancer Genome Atlas (TCGA) and the Gene Expression Omnibus (GEO) database (https://www.ncbi.nlm.nih.gov/geo/). These findings offer insights into ccRCC progression and metastasis. We identified VMRGs-related subtypes using consistent clustering methods. The signature of the VMRGs was created using univariate Cox regression and LASSO Cox regression analyses. To evaluate differences in immune cell infiltration, we employed ssGSEA. Afterwards, we created an innovative risk assessment model, known as the VM index, along with a nomogram to forecast the prognosis of ccRCC. Additionally, we verified the expression of an important gene related to VM, peroxiredoxin 2 (PRDX2), in tissue samples. Furthermore, we assessed the sensitivity to drugs in various groups by utilizing the pRRophetic R package. Significant predictors of survival rates in both high- and low-risk groups of KIRC patients were identified as VMRGs. The independent prognostic factors for RCC were confirmed by both univariate and multivariate Cox regression analyses, validating VMRG risk signatures. Differences were observed in drug sensitivity, immune checkpoint expression, and responses to immune therapy between patients classified into high- and low-VMRG-risk groups. Our nomograms consistently demonstrated precise predictive capabilities. Finally, we experimentally verified PRDX2 expression levels and their impact on prognosis. The signature predicts patient prognosis and therapy response, laying the groundwork for future clinical strategies in treating ccRCC patients.

摘要

透明细胞肾细胞癌(ccRCC)是人类中最常见的肾癌类型。不幸的是,诊断时已发生播散性肾癌的患者预后往往较差。肿瘤的快速生长需要高效的血液供应来提供氧气和营养物质,这涉及到血液从血管循环至肿瘤组织,促进肿瘤细胞进入细胞外基质。血管生成拟态(VM)对肿瘤的生长和转移有显著影响。在本研究中,我们通过分析癌症基因组图谱(TCGA)和基因表达综合数据库(GEO,https://www.ncbi.nlm.nih.gov/geo/)中607例肾透明细胞癌(KIRC)的数据,鉴定出了与血管生成拟态相关的基因(VMRGs)。这些发现为ccRCC的进展和转移提供了见解。我们使用一致性聚类方法确定了与VMRGs相关的亚型。通过单变量Cox回归和LASSO Cox回归分析创建了VMRGs特征。为了评估免疫细胞浸润的差异,我们采用了单样本基因集富集分析(ssGSEA)。之后,我们创建了一种创新的风险评估模型,即VM指数,以及一个列线图来预测ccRCC的预后。此外,我们在组织样本中验证了与VM相关的重要基因过氧化物酶体增殖物激活受体γ辅激活因子2(PRDX2)的表达。此外,我们利用pRRophetic R包评估了不同组对药物的敏感性。KIRC患者高风险组和低风险组生存率的显著预测因子均被确定为VMRGs。通过单变量和多变量Cox回归分析证实了RCC的独立预后因素,验证了VMRG风险特征。在高VMRG风险组和低VMRG风险组患者之间,观察到了药物敏感性、免疫检查点表达及免疫治疗反应的差异。我们的列线图始终显示出精确的预测能力。最后,我们通过实验验证了PRDX2的表达水平及其对预后的影响。该特征可预测患者的预后和治疗反应,为未来治疗ccRCC患者的临床策略奠定了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9f7f/10765515/c5103e32c1eb/fphar-14-1333507-g001.jpg

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