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.中GDP-D-甘露糖焦磷酸化酶和katanin的全基因组鉴定与表达分析

Genome-wide identification and expression analysis of GDP-D-mannose pyrophosphorylase and KATANIN in .

作者信息

Wang Chubiao, Luo Jianzhong, He Wenliang, Huang Anying, Lu Wanhong, Lin Yan, Ou Yuduan

机构信息

College of Coastal Agricultural Sciences, Guangdong Ocean University, Zhanjiang, China.

Research Institute of Fast-Growing Trees, Chinese Academy of Forestry, Zhanjiang, China.

出版信息

Front Plant Sci. 2023 Dec 18;14:1308354. doi: 10.3389/fpls.2023.1308354. eCollection 2023.

Abstract

The GDP-D-mannose pyrophosphorylase () and microtubule severing enzyme KATANIN () are crucial for wood formation. Although functional identification has been performed in , few comprehensive studies have been conducted in forest trees. In this study, we discovered 8 and 4 genes by analyzing the whole genome sequence of . The chromosomal location, genome synteny, phylogenetic relationship, protein domain, motif identification, gene structure, cis-acting regulatory elements, and protein-interaction of and were all investigated. has just one pair of segmentally duplicated genes, while has no duplication events. According to gene structure, two 5' UTRs were identified in . Furthermore, there is no protein-interaction between KTN and GMP. Based on real-time PCR, the expression of most genes showed a positive connection with DBH diameters. In addition, the expression of and genes were greater in different size tree, indicating that these genes are important in secondary xylem production. Overall, this findings will enhance our comprehension of the intricacy of & across diverse DBHs and furnish valuable insights for future functional characterization of specific genes in

摘要

GDP-D-甘露糖焦磷酸化酶()和微管切断酶katanin()对木材形成至关重要。尽管已在中进行了功能鉴定,但在林木中进行的全面研究很少。在本研究中,我们通过分析的全基因组序列发现了8个和4个基因。对和的染色体定位、基因组共线性、系统发育关系、蛋白质结构域、基序鉴定、基因结构、顺式作用调控元件和蛋白质相互作用进行了全面研究。只有一对片段重复基因,而没有重复事件。根据基因结构,在中鉴定出两个5'UTR。此外,KTN和GMP之间不存在蛋白质相互作用。基于实时PCR,大多数基因的表达与胸径呈正相关。此外,和基因在不同大小树木中的表达更高,表明这些基因在次生木质部产生中很重要。总体而言,这些发现将增强我们对不同胸径的和复杂性的理解,并为未来特定基因的功能表征提供有价值的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9394/10766700/4db881430777/fpls-14-1308354-g001.jpg

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