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竹生羊奶子的完整叶绿体基因组:一种大熊猫食用的竹类物种。

The complete chloroplast genome of T. P. Yi: a panda dietary bamboo species.

作者信息

Wu Hao, Li Xue, Xu Xianglei, Zhang Yingjian, Su Tao

机构信息

Co-Innovation Center for Sustainable Forestry in Southern China, College of Life Sciences, Nanjing Forestry University, Nanjing, China.

Key Laboratory of State Forestry Administration on Subtropical Forest Biodiversity Conservation, Nanjing Forestry University, Nanjing, China.

出版信息

Mitochondrial DNA B Resour. 2023 Nov 1;8(11):1183-1186. doi: 10.1080/23802359.2023.2275834. eCollection 2023.

Abstract

T. P. Yi, categorized into Arundinarieae (Poaceae: Bambusoideae), is a critical species endemic to Minshan Mountain, China. provides shelter and food sources for the giant panda and other endangered animals (e.g. red panda and snub-nosed monkey). This study assembled the complete chloroplast (cp) genome of using the high-throughput sequencing technique. The total cp length was 139,706 bp, containing 130 annotated genes with predicted GC content at 38.87%. The cp genome comprises two single-copy (LSC and SSC) regions, harboring 83,282 bp and 12,830 bp, respectively. The SSC regions were located between two inverted repeats (IR) regions (21,797 bp). Reconstruction of the phylogenetic tree illustrated that clustered in Fargesia II. The study provides theoretical clues to explore the geographical distribution and species-level identification of the genus.

摘要

冷箭竹属于禾本科竹亚科青篱竹族,是中国岷山地区特有的关键物种。它为大熊猫和其他濒危动物(如小熊猫和金丝猴)提供了栖息地和食物来源。本研究利用高通量测序技术组装了冷箭竹的完整叶绿体(cp)基因组。cp基因组总长139,706 bp,包含130个注释基因,预测GC含量为38.87%。cp基因组由两个单拷贝(LSC和SSC)区域组成,分别为83,282 bp和12,830 bp。SSC区域位于两个反向重复(IR)区域(21,797 bp)之间。系统发育树的重建表明,冷箭竹聚在箭竹属II类群中。该研究为探索冷箭竹属的地理分布和物种水平鉴定提供了理论线索。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d7c4/10769560/1f88844b885b/TMDN_A_2275834_F0001_C.jpg

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