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(竹亚科:青篱竹族)的完整叶绿体基因组序列:一种中国特有的观赏竹种。

The complete chloroplast genome sequence of (Bambusoideae: Arundinarieae): an ornamental bamboo species endemic to China.

作者信息

Zheng Xiao, Yang Meng, Ding Yu-Long, Lin Shu-Yan

机构信息

Co-Innovation Center for Sustainable Forestry in Southern China, Bamboo Research Institute, College of Biology and the Environment, Nanjing Forestry University, Nanjing, P. R. China.

出版信息

Mitochondrial DNA B Resour. 2020 Feb 11;5(1):1119-1121. doi: 10.1080/23802359.2020.1726224.

Abstract

We, at first, fully characterized the complete chloroplast genome of the woody bamboo using genome skimming and focused on comparative analyses among and . This newly sequenced chloroplast genome (GenBank NO. MN917206) is a typical circular structure with 139,711 bp in length and comprises of an 83,295 bp large single-copy (LSC) region, a 12,824 bp small single-copy (SSC) region, and a pair of 21,796 bp inverted repeats (IRs). The GC content of is 38.9% and the sequences contained 132 unique genes were successfully annotated, including 39 tRNA genes, 8 rRNA genes, and 85 protein-coding genes. Phylogenetic analysis shows that is highly clustered in the clade (clade VI) of Arundinarieae, a sister of the clade of and was not clustered on the same branch as . Therefore, it is more accurate to classify into .

摘要

我们首先利用基因组鸟枪法对木本竹子的完整叶绿体基因组进行了全面表征,并着重对[此处原文缺失部分内容]之间进行了比较分析。这个新测序的叶绿体基因组(GenBank编号:MN917206)是典型的环状结构,长度为139,711 bp,由一个83,295 bp的大单拷贝(LSC)区域、一个12,824 bp的小单拷贝(SSC)区域和一对21,796 bp的反向重复序列(IRs)组成。[此处原文缺失部分内容]的GC含量为38.9%,成功注释了包含132个独特基因的序列,包括39个tRNA基因、8个rRNA基因和85个蛋白质编码基因。系统发育分析表明,[此处原文缺失部分内容]高度聚集在青篱竹族的[此处原文缺失部分内容]分支(分支VI)中,是[此处原文缺失部分内容]分支的姐妹分支,且未与[此处原文缺失部分内容]聚集在同一分支上。因此,将[此处原文缺失部分内容]分类到[此处原文缺失部分内容]中更为准确。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2e12/7748808/fe81378aa12e/TMDN_A_1726224_F0001_C.jpg

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