Phylogenetic analyses allow species-level recognition of varieties that cause black stain root disease of conifers in western North America.

is a native fungal pathogen in western North America that causes black stain root disease (BSRD) of conifers. Three host-specialized varieties of this pathogen were previously described: var. on pinyon pines ( and . ); var. , primarily on hard pines (e.g., . , . ); and var. on Douglas-fir (). Morphological, physiological, and ecological differences among the three pathogen varieties have been previously determined; however, DNA-based characterization and analyses are needed to determine the genetic relationships among these varieties. The objective of this study was to use DNA sequences of 10 gene regions to assess phylogenetic relationships among isolates collected from different hosts. The multigene phylogenetic analyses, based on maximum likelihood and Bayesian inference, strongly supported species-level separation of the three varieties. These results, in conjunction with previously established phenotypic differences, support the elevation of var. and var. to the species level as . comb. nov. and . comb. nov., respectively, while maintaining var. as . Characterization of the three species, each with distinct host ranges, provides a baseline to further understand the ecological interactions and evolutionary relationships of these forest pathogens, which informs management of black stain root disease.