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解析种子抗肾结石的多靶点药理机制:网络药理学与分子对接方法

Deciphering Multi-target Pharmacological Mechanism of Seeds against Kidney Stones: Network Pharmacology and Molecular Docking Approach.

作者信息

Shahzadi Aqsa, Ashfaq Usman Ali, Khurshid Mohsin, Nisar Muhammad Atif, Syed Asad, Bahkali Ali H

机构信息

Department of Bioinformatics and Biotechnology, Government College University Faisalabad, Faisalabad, Pakistan.

Institute of Microbiology, Government College University Faisalabad, Faisalabad, Pakistan.

出版信息

Curr Pharm Des. 2024;30(4):295-309. doi: 10.2174/0113816128271781231104151155.

Abstract

BACKGROUND

Urolithiasis is a prevalent condition with significant morbidity and economic implications. The economic burden associated with urolithiasis primarily stems from medical expenses. Previous literature suggests that herbal plants, including , have lithotriptic capabilities. is an annual, herbaceous, widely grown, and monoecious vegetative plant known for its antioxidants, fibers, and fatty acids. Recent studies on seeds have shown therapeutic potential in reducing bladder stones and urodynamic illnesses, like kidney stones. However, the precise molecular and pharmacological mechanisms are unclear.

OBJECTIVE

In this research, we employed network pharmacology and molecular docking to examine the active compounds and biological mechanisms of against kidney stones.

METHODS

Active constituents were obtained from previous studies and the IMPPAT database, with their targets predicted using Swiss target prediction. Kidney stone-associated genes were collected from DisGeNET and GeneCards. The active constituent-target-pathway network was constructed using Cytoscape, and the target protein-protein interaction network was generated using the STRING database. Gene enrichment analysis of core targets was conducted using DAVID. Molecular docking was performed to identify potential kidney stone-fighting agents.

RESULTS

The findings revealed that contains 18 active components and has 192 potential gene targets, including AR, EGFR, ESR1, AKT1, MAPK3, SRC, and MTOR. Network analysis demonstrated that seeds may prevent kidney stones by influencing disease-related signaling pathways. Molecular docking indicated that key kidney stone targets (mTOR, EGFR, AR, and ESR1) effectively bind with active constituents of .

CONCLUSION

These findings provide insight into the anti-kidney stone effects of at a molecular level. In conclusion, this study contributes to understanding the potential of in combating kidney stones and lays the foundation for further research.

摘要

背景

尿路结石是一种普遍存在的疾病,具有重大的发病率和经济影响。与尿路结石相关的经济负担主要源于医疗费用。先前的文献表明,包括[植物名称未给出]在内的草药植物具有溶石能力。[植物名称未给出]是一种一年生草本植物,广泛种植且雌雄同株,以其抗氧化剂、纤维和脂肪酸而闻名。最近对[植物名称未给出]种子的研究表明,它在减少膀胱结石和尿动力学疾病(如肾结石)方面具有治疗潜力。然而,确切的分子和药理机制尚不清楚。

目的

在本研究中,我们采用网络药理学和分子对接技术来研究[植物名称未给出]抗肾结石的活性成分和生物学机制。

方法

从先前的研究和IMPPAT数据库中获取活性成分,并使用瑞士靶点预测工具预测其靶点。从DisGeNET和GeneCards收集与肾结石相关的基因。使用Cytoscape构建活性成分-靶点-通路网络,并使用STRING数据库生成靶点蛋白-蛋白相互作用网络。使用DAVID对核心靶点进行基因富集分析。进行分子对接以识别潜在的抗肾结石药物。

结果

研究结果表明,[植物名称未给出]含有18种活性成分,具有192个潜在基因靶点,包括AR、EGFR、ESR1、AKT1、MAPK3、SRC和MTOR。网络分析表明,[植物名称未给出]种子可能通过影响疾病相关信号通路来预防肾结石。分子对接表明,关键的肾结石靶点(mTOR、EGFR、AR和ESR1)与[植物名称未给出]的活性成分有效结合。

结论

这些发现为[植物名称未给出]在分子水平上的抗肾结石作用提供了见解。总之,本研究有助于了解[植物名称未给出]对抗肾结石的潜力,并为进一步研究奠定基础。

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