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酿酒酵母物种的自然特征变异。

Natural trait variation across Saccharomycotina species.

机构信息

Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA 94720, USA.

Howard Hughes Medical Institute and Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720, USA.

出版信息

FEMS Yeast Res. 2024 Jan 9;24. doi: 10.1093/femsyr/foae002.

DOI:10.1093/femsyr/foae002
PMID:38218591
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10833146/
Abstract

Among molecular biologists, the group of fungi called Saccharomycotina is famous for its yeasts. These yeasts in turn are famous for what they have in common-genetic, biochemical, and cell-biological characteristics that serve as models for plants and animals. But behind the apparent homogeneity of Saccharomycotina species lie a wealth of differences. In this review, we discuss traits that vary across the Saccharomycotina subphylum. We describe cases of bright pigmentation; a zoo of cell shapes; metabolic specialties; and species with unique rules of gene regulation. We discuss the genetics of this diversity and why it matters, including insights into basic evolutionary principles with relevance across Eukarya.

摘要

在分子生物学家中,被称为子囊菌的真菌群体以其酵母而闻名。这些酵母反过来又因其共同点而闻名——遗传、生化和细胞生物学特征,这些特征可作为植物和动物的模型。但在子囊菌物种表面上的同质性背后,存在着大量的差异。在这篇综述中,我们讨论了子囊菌亚门中存在的各种特征。我们描述了一些具有明亮色素、多种细胞形状、特殊代谢功能以及具有独特基因调控规则的物种。我们讨论了这种多样性的遗传学及其重要性,包括对整个真核生物具有相关性的基本进化原则的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/134d/10833146/f12edf0d1dd8/foae002fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/134d/10833146/f12edf0d1dd8/foae002fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/134d/10833146/f12edf0d1dd8/foae002fig1.jpg

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Natural trait variation across Saccharomycotina species.酿酒酵母物种的自然特征变异。
FEMS Yeast Res. 2024 Jan 9;24. doi: 10.1093/femsyr/foae002.
2
The cell morphological diversity of Saccharomycotina yeasts.酿酒酵母的细胞形态多样性。
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本文引用的文献

1
Inter-species association mapping links splice site evolution to METTL16 and SNRNP27K.种间关联图谱将剪接位点进化与 METTL16 和 SNRNP27K 联系起来。
Elife. 2023 Oct 3;12:e91997. doi: 10.7554/eLife.91997.
2
Paralogs in the PKA Regulon Traveled Different Evolutionary Routes to Divergent Expression in Budding Yeast.蛋白激酶A调控子中的旁系同源基因在出芽酵母中沿着不同的进化路径实现了差异表达。
Front Fungal Biol. 2021 Apr 27;2:642336. doi: 10.3389/ffunb.2021.642336. eCollection 2021.
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The evolution of anaerobic growth in Saccharomycotina yeasts.
酵母中厌氧生长的进化。
Yeast. 2023 Sep;40(9):395-400. doi: 10.1002/yea.3890. Epub 2023 Aug 1.
4
Genomes of fungi and relatives reveal delayed loss of ancestral gene families and evolution of key fungal traits.真菌及其亲缘关系的基因组揭示了祖先基因家族的丢失延迟和关键真菌特征的进化。
Nat Ecol Evol. 2023 Aug;7(8):1221-1231. doi: 10.1038/s41559-023-02095-9. Epub 2023 Jun 22.
5
Codon Optimization Improves the Prediction of Xylose Metabolism from Gene Content in Budding Yeasts.密码子优化提高了从出芽酵母的基因含量预测木糖代谢的能力。
Mol Biol Evol. 2023 Jun 1;40(6). doi: 10.1093/molbev/msad111.
6
Pulcherriminic acid modulates iron availability and protects against oxidative stress during microbial interactions.美丽棒曲霉素通过调节铁的可用性和抵御微生物互作过程中的氧化应激来发挥作用。
Nat Commun. 2023 May 3;14(1):2536. doi: 10.1038/s41467-023-38222-0.
7
Galactomyces candidus diversity in the complex mycobiota of cow-milk bryndza cheese comprising antagonistic and sensitive strains.乳杆菌属多样性在复杂的共生真菌群牛奶奶酪中,包括拮抗和敏感菌株。
Int J Food Microbiol. 2023 Mar 2;388:110088. doi: 10.1016/j.ijfoodmicro.2023.110088. Epub 2023 Jan 13.
8
Oleaginous yeasts: Time to rethink the definition?产油酵母:是时候重新思考定义了吗?
Yeast. 2022 Nov;39(11-12):553-606. doi: 10.1002/yea.3827. Epub 2022 Nov 28.
9
Functional Divergence in a Multi-gene Family Is a Key Evolutionary Innovation for Anaerobic Growth in Saccharomyces cerevisiae.多基因家族的功能分化是酿酒酵母厌氧生长的关键进化创新。
Mol Biol Evol. 2022 Oct 7;39(10). doi: 10.1093/molbev/msac202.
10
Evolution of the human pathogenic lifestyle in fungi.真菌中人类致病生活方式的演变。
Nat Microbiol. 2022 May;7(5):607-619. doi: 10.1038/s41564-022-01112-0. Epub 2022 May 4.