Produce Safety and Microbiology Research Unit, US Department of Agriculture, Agricultural Research Service, Western Regional Research Center, Albany, CA, 94710, USA.
Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens, GA, 30602, USA.
Food Microbiol. 2024 May;119:104431. doi: 10.1016/j.fm.2023.104431. Epub 2023 Nov 28.
Isolation of Salmonella from enrichment cultures of food or environmental samples is a complicated process. Numerous factors including fitness in various selective enrichment media, relative starting concentrations in pre-enrichment, and competition among multi-serovar populations and associated natural microflora, come together to determine which serovars are identified from a given sample. A recently developed approach for assessing the relative abundance (RA) of multi-serovar Salmonella populations (CRISPR-SeroSeq or Deep Serotyping, DST) is providing new insight into how these factors impact the serovars observed, especially when different selective enrichment methods are used to identify Salmonella from a primary enrichment sample. To illustrate this, we examined Salmonella-positive poultry pre-enrichment samples through the selective enrichment process in Tetrathionate (TT) and Rappaport Vassiliadis (RVS) broths and assessed recovery of serovars with each medium. We observed the RA of serovars detected post selective enrichment varied depending on the medium used, initial concentration, and competitive fitness factors, all which could result in minority serovars in pre-enrichment becoming dominant serovars post selective enrichment. The data presented provide a greater understanding of culture biases and lays the groundwork for investigations into robust enrichment and plating media combinations for detecting Salmonella serovars of greater concern for human health.
从食品或环境样品的富集培养物中分离沙门氏菌是一个复杂的过程。许多因素,包括在各种选择性富集培养基中的适应性、预富集时的相对起始浓度,以及多血清型群体之间的竞争和相关的自然微生物群落,共同决定了从给定样本中鉴定出哪些血清型。最近开发的一种评估多血清型沙门氏菌种群相对丰度(RA)的方法(CRISPR-SeroSeq 或 Deep Serotyping,DST)为了解这些因素如何影响观察到的血清型提供了新的见解,特别是当使用不同的选择性富集方法从初级富集样本中鉴定沙门氏菌时。为了说明这一点,我们通过在四硫磺酸钠(TT)和瑞普氏(RVS)肉汤中的选择性富集过程检查了沙门氏菌阳性家禽预富集样本,并评估了每种培养基对血清型的回收情况。我们观察到,选择性富集后检测到的血清型的 RA 取决于所用的培养基、初始浓度和竞争适应能力因素,所有这些因素都可能导致预富集时的少数血清型在选择性富集后成为主要血清型。所提供的数据提供了对培养偏倚的更深入了解,并为研究用于检测对人类健康更相关的沙门氏菌血清型的强大富集和 plating 培养基组合奠定了基础。