Department of Life Sciences, Ben-Gurion University of the Negev, Be'er-Sheva, Israel.
Department of Physics, Ben-Gurion University of the Negev, Be'er-Sheva, Israel.
Biophys J. 2024 Feb 20;123(4):502-508. doi: 10.1016/j.bpj.2024.01.015. Epub 2024 Jan 19.
Cell dimensions of rod-shaped bacteria such as Escherichia coli are connected to mass growth and chromosome replication. During their interdivision cycle (τ min), cells enlarge by elongation only, but at faster growth in richer media, they are also wider. Changes in width W upon nutritional shift-up (shortening τ) occur during the division process. The elusive signal directing the mechanism for W determination is likely related to the tightly linked duplications of the nucleoid (DNA) and the sacculus (peptidoglycan), the only two structures (macromolecules) existing in a single copy that are coupled, temporally and spatially. Six known parameters related to the nucleoid structure and replication are reasonable candidates to convey such a signal, all simple functions of the key number of replication positions n(=C/τ), the ratio between the rates of growth (τ) and of replication (C). The current analysis of available literature-recorded data discovered that, of these, nucleoid complexity NC[=(2-1)/(n×ln2)] is by far the most likely parameter affecting cell width W. The exceedingly high correlations found between these two seemingly unrelated measures (NC and W) indicate that coupling between them is of major importance to the species' survival. As an exciting corollary, to the best of our knowledge, a new, indirect approach to estimate DNA replication rate is revealed. Potential involvement of DNA topoisomerases in W determination is also proposed and discussed.
杆状细菌(如大肠杆菌)的细胞尺寸与质量生长和染色体复制有关。在它们的分裂周期(τ min)中,细胞仅通过伸长而增大,但在营养更丰富的培养基中生长更快时,它们也更宽。在营养物质向上转移(缩短 τ)时,宽度 W 的变化发生在分裂过程中。指导 W 确定机制的难以捉摸的信号可能与核区(DNA)和囊泡(肽聚糖)的紧密连锁复制有关,这是仅存在于单个副本中的两个结构(大分子),在时间和空间上是耦合的。与核区结构和复制相关的六个已知参数是传递此类信号的合理候选者,它们都是关键复制位置 n(=C/τ)的简单函数,n 是生长(τ)和复制(C)的比率。对现有文献记录数据的当前分析发现,在这些参数中,核区复杂度 NC[=(2-1)/(n×ln2)]是迄今为止最有可能影响细胞宽度 W 的参数。这两个看似不相关的度量(NC 和 W)之间发现的极高相关性表明,它们之间的耦合对物种的生存至关重要。作为一个令人兴奋的推论,据我们所知,揭示了一种新的、间接估计 DNA 复制率的方法。还提出并讨论了 DNA 拓扑异构酶在 W 确定中的潜在作用。