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基于 18S rRNA 长度可变区 L(LVR L)的二级和三级结构中的分子独特性揭示的 Cydnidae 科(半翅目:异翅目:Pentatomoidea)分类不一致性

Inconsistencies in the Classification of the Family Cydnidae (Hemiptera: Heteroptera: Pentatomoidea) Revealed by Molecular Apomorphies in the Secondary and Tertiary Structures of 18S rRNA Length-Variable Region L (LVR L).

机构信息

Institute of Biology, University of Opole, Oleska 22, 45-052 Opole, Poland.

出版信息

Int J Mol Sci. 2024 Jan 11;25(2):939. doi: 10.3390/ijms25020939.

Abstract

The SSU nuclear rDNA (encoding 18S ribosomal RNA) is one of the most frequently sequenced genes in the molecular analysis of insects. Molecular apomorphies in the secondary and tertiary structures of several 18S rRNA length-variable regions (LVRs) located within the V2, V4, and V7 hypervariable regions can be good indicators for recovering monophyletic groups within some heteropteran families. Among the LVRs that have been analysed, the LVR L in the V4 hypervariable region is the longest and most crucial for such assessments. We analysed the 18S rRNA V4 hypervariable region sequences of 45 species from the family Cydnidae, including all 6 subfamilies (Amaurocorinae, Amnestinae, Cephalocteinae, Cydninae, Garsauriinae, and Sehirinae) and three pentatomoid families (Parastrachiidae, Thaumastellidae, and Thyreocoridae), which have often been included in the broadly defined Cydnidae family. This is the first time that representatives of all Cydnidae subfamilies have been included in a molecular analysis. Only taxa from two subfamilies, Sehirinae and Cydninae, have been used in previous molecular studies. The secondary and tertiary structures of the LVR L were predicted for each species using the two-step procedure already accepted for such analyses to recover any molecular apomorphy essential for determining monophyly. The results of our comparative studies contradict the current understanding of the relationships among burrowing bugs and the current family classification.

摘要

SSU 核 rDNA(编码 18S 核糖体 RNA)是昆虫分子分析中最常测序的基因之一。位于 V2、V4 和 V7 高变区的几个 18S rRNA 长度可变区(LVR)的二级和三级结构中的分子独特性可以很好地指示某些半翅目科内的单系群恢复。在已分析的 LVR 中,V4 高变区中的 LVR L 是最长的,对于这种评估最为关键。我们分析了来自 Cydnidae 科的 45 种物种的 18S rRNA V4 高变区序列,包括所有 6 个亚科(Amaurocorinae、Amnestinae、Cephalocteinae、Cydninae、Garsauriinae 和 Sehirinae)和三个半翅目科(Parastrachiidae、Thaumastellidae 和 Thyreocoridae),它们经常被包含在广义定义的 Cydnidae 科中。这是第一次在分子分析中包括 Cydnidae 科的所有亚科代表。以前的分子研究仅使用了两个亚科(Sehirinae 和 Cydninae)的分类单元。使用已经接受的两步程序预测了每个物种的 LVR L 的二级和三级结构,以恢复对于确定单系性至关重要的任何分子独特性。我们的比较研究结果与当前对穴居昆虫的关系以及当前的科分类的理解相矛盾。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7995/10815949/68665301d333/ijms-25-00939-g006.jpg

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