Centre of Molecular and Macromolecular Studies, Polish Academy of Sciences, Sienkiewicza 112, 90-363 Lodz, Poland.
Institute of Evolutionary Biology, Faculty of Biology, Biological and Chemical Research Centre, University of Warsaw, Żwirki i Wigury 101, 02-089 Warsaw, Poland.
Molecules. 2024 Jan 9;29(2):338. doi: 10.3390/molecules29020338.
In silico studies were performed to assess the binding affinity of selected organophosphorus compounds toward the acetylcholinesterase enzyme (AChE). Quantum mechanical calculations, molecular docking, and molecular dynamics (MD) with molecular mechanics Generalized-Born surface area (MM/GBSA) were applied to assess quantitatively differences between the binding energies of acetylcholine (ACh; the natural agonist of AChE) and neurotoxic, synthetic correlatives (so-called "Novichoks", and selected compounds from the G- and V-series). Several additional quantitative descriptors like root-mean-square fluctuation (RMSF) and the solvent accessible surface area (SASA) were briefly discussed to give-to the best of our knowledge-the first quantitative in silico description of AChE-Novichok non-covalent binding process and thus facilitate the search for an efficient and effective treatment for Novichok intoxication and in a broader sense-intoxication with other warfare nerve agents as well.
采用量子力学计算、分子对接和分子力学广义 Born 表面积(MM/GBSA)分子动力学(MD)方法,对选定的有机磷化合物与乙酰胆碱酯酶(AChE)的结合亲和力进行了计算机模拟研究。评估了乙酰胆碱(ACh;AChE 的天然激动剂)和神经毒性合成类似物(所谓的“Novichoks”以及 G 系列和 V 系列中的选定化合物)之间结合能的差异。简要讨论了几个附加的定量描述符,如均方根波动(RMSF)和溶剂可及表面积(SASA),以提供(据我们所知)对 AChE-Novichok 非共价结合过程的首次定量计算机描述,并因此有助于寻找有效的 Novichok 中毒治疗方法,更广泛地说,还可以用于治疗其他战争神经毒剂中毒。