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增加磷酸戊糖途径通量以提高工程化质粒DNA产量

Increasing the Pentose Phosphate Pathway Flux to Improve Plasmid DNA Production in Engineered .

作者信息

de la Cruz Mitzi, Kunert Flavio, Taymaz-Nikerel Hilal, Sigala Juan-Carlos, Gosset Guillermo, Büchs Jochen, Lara Alvaro R

机构信息

Departamento de Procesos y Tecnología, Universidad Autónoma Metropolitana, Mexico City 05348, Mexico.

Chair of Biochemical Engineering (AVT.BioVT), RWTH Aachen University, 52074 Aachen, Germany.

出版信息

Microorganisms. 2024 Jan 12;12(1):150. doi: 10.3390/microorganisms12010150.

Abstract

The demand of plasmid DNA (pDNA) as a key element for gene therapy products, as well as mRNA and DNA vaccines, is increasing together with the need for more efficient production processes. An engineered strain lacking the phosphotransferase system and the pyruvate kinase A gene has been shown to produce more pDNA than its parental strain. With the aim of improving pDNA production in the engineered strain, several strategies to increase the flux to the pentose phosphate pathway (PPP) were evaluated. The simultaneous consumption of glucose and glycerol was a simple way to increase the growth rate, pDNA production rate, and supercoiled fraction (SCF). The overexpression of key genes from the PPP also improved pDNA production in glucose, but not in mixtures of glucose and glycerol. Particularly, the gene coding for the glucose 6-phosphate dehydrogenase (G6PDH) strongly improved the SCF, growth rate, and pDNA production rate. A linear relationship between the G6PDH activity and pDNA yield was found. A higher flux through the PPP was confirmed by flux balance analysis, which also estimates relevant differences in fluxes of the tricarboxylic acid cycle. These results are useful for developing further cell engineering strategies to increase pDNA production and quality.

摘要

作为基因治疗产品以及mRNA和DNA疫苗的关键要素,质粒DNA(pDNA)的需求随着对更高效生产工艺的需求而不断增加。已证明一种缺乏磷酸转移酶系统和丙酮酸激酶A基因的工程菌株比其亲本菌株能产生更多的pDNA。为了提高工程菌株中pDNA的产量,评估了几种增加磷酸戊糖途径(PPP)通量的策略。同时消耗葡萄糖和甘油是提高生长速率、pDNA生产率和超螺旋分数(SCF)的一种简单方法。PPP关键基因的过表达也提高了葡萄糖中pDNA的产量,但在葡萄糖和甘油混合物中没有效果。特别是,编码6-磷酸葡萄糖脱氢酶(G6PDH)的基因显著提高了SCF、生长速率和pDNA生产率。发现G6PDH活性与pDNA产量之间存在线性关系。通量平衡分析证实了通过PPP的通量更高,该分析还估计了三羧酸循环通量的相关差异。这些结果对于开发进一步的细胞工程策略以提高pDNA产量和质量很有用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2d2d/10820320/ba20b4168dd4/microorganisms-12-00150-g001.jpg

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