Shenzhen Research Institute of Shandong University, Shenzhen, Guangdong, 518057, PR China.
Marine College, Shandong University, Weihai, Shandong, 264209, PR China.
Microb Genom. 2024 Jan;10(1). doi: 10.1099/mgen.0.001182.
In this study, two novel bacterial strains were isolated from coastal sediment of Weihai, China. The two strains were Gram-stain-negative and facultatively aerobic, designated 3-1745 and A346. Based on phenotypic, genetic and phylogenetic properties, strains 3-1745 and A346 represent two novel species of the genus . The results of genome analysis revealed many central carbohydrate metabolism pathways such as gluconeogenesis, pyruvate oxidation, tricyclic acid cycle, pentose phosphate pathway and PRPP biosynthesis in the genus . The ability of strains 3-1745 and A346 to utilize volatile fatty acids was experimentally confirmed. Polyhydroxyalkanoate synthases (PhaA, PhaB and PhaC) for the synthesis of polyhydroxyalkanoates were prevalent in the genus . Multiple BGCs (biosynthetic gene clusters) including betalactone, ectoine, ranthipeptide, redox-cofactor, RiPPs (ribosomally synthesized post-translationally modified peptides) and T3PKS (polyketide synthases) in the genome of the genus were found. Additional genome analyses suggested that the genus contained diverse potential mechanisms of salt tolerance and mainly utilized oligosaccharides. This is the first report on broad genomic analyses of the genus with the description of two novel species and potential ecological and biotechnological implications.
在这项研究中,从中国威海的沿海沉积物中分离出了两株新型细菌。这两株菌革兰氏染色阴性,兼性需氧,分别命名为 3-1745 和 A346。基于表型、遗传和系统发育特性,菌株 3-1745 和 A346 代表了属的两个新种。基因组分析的结果表明,该属中存在许多中央碳水化合物代谢途径,如糖异生、丙酮酸氧化、三羧酸循环、戊糖磷酸途径和 PRPP 生物合成。实验证实了菌株 3-1745 和 A346 利用挥发性脂肪酸的能力。聚羟基烷酸酯合酶(PhaA、PhaB 和 PhaC)用于合成聚羟基烷酸酯在属中普遍存在。在属的基因组中发现了多个 BGCs(生物合成基因簇),包括β-内酰胺、ectoine、ranthipeptide、redox-cofactor、RiPPs(核糖体合成的翻译后修饰肽)和 T3PKS(聚酮合酶)。进一步的基因组分析表明,该属包含多种潜在的耐盐机制,主要利用寡糖。这是首次对属进行广泛的基因组分析,并描述了两个新种以及潜在的生态和生物技术意义。