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茶树(Camellia sinensis)GH3基因家族的全基因组鉴定与表达特征分析

Genome-wide identification and expression characterization of the GH3 gene family of tea plant (Camellia sinensis).

作者信息

Wang Xinge, Jia Chunyu, An Lishuang, Zeng Jiangyan, Ren Aixia, Han Xin, Wang Yiqing, Wu Shuang

机构信息

School of Life Science and Agriculture, Qiannan Normal University for Nationalities, Duyun, Guizhou, 558000, China.

Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Guizhou University, Guiyang, Guizhou, 550025, China.

出版信息

BMC Genomics. 2024 Jan 27;25(1):120. doi: 10.1186/s12864-024-10004-y.

Abstract

To comprehensively understand the characteristics of the GH3 gene family in tea plants (Camellia sinensis), we identified 17 CsGH3 genes and analyzed their physicochemical properties, phylogenetic relationships, gene structures, promoters, and expression patterns in different tissues. The study showed that the 17 CsGH3 genes are distributed on 9 chromosomes, and based on evolutionary analysis, the CsGH3 members were divided into three subgroups. Gene duplication analysis revealed that segmental duplications have a significant impact on the amplification of CsGH3 genes. In addition, we identified and classified cis-elements in the CsGH3 gene promoters and detected elements related to plant hormone responses and non-biotic stress responses. Through expression pattern analysis, we observed tissue-specific expression of CsGH3.3 and CsGH3.10 in flower buds and roots. Moreover, based on predictive analysis of upstream regulatory transcription factors of CsGH3, we identified the potential transcriptional regulatory role of gibberellin response factor CsDELLA in CsGH3.14 and CsGH3.15. In this study, we found that CsGH3 genes are involved in a wide range of activities, such as growth and development, stress response, and transcription. This is the first report on CsGH3 genes and their potential roles in tea plants. In conclusion, these results provide a theoretical basis for elucidating the role of GH3 genes in the development of perennial woody plants and offer new insights into the synergistic effects of multiple hormones on plant growth and development in tea plants.

摘要

为全面了解茶树(Camellia sinensis)中GH3基因家族的特征,我们鉴定了17个CsGH3基因,并分析了它们的理化性质、系统发育关系、基因结构、启动子以及在不同组织中的表达模式。研究表明,17个CsGH3基因分布在9条染色体上,基于进化分析,CsGH3成员被分为三个亚组。基因复制分析表明,片段重复对CsGH3基因的扩增有显著影响。此外,我们鉴定并分类了CsGH3基因启动子中的顺式元件,并检测到与植物激素反应和非生物胁迫反应相关的元件。通过表达模式分析,我们观察到CsGH3.3和CsGH3.10在花芽和根中具有组织特异性表达。此外,基于对CsGH3上游调控转录因子的预测分析,我们确定了赤霉素反应因子CsDELLA在CsGH3.14和CsGH3.15中的潜在转录调控作用。在本研究中,我们发现CsGH3基因参与了广泛的活动,如生长发育、胁迫反应和转录。这是关于CsGH3基因及其在茶树中潜在作用的首次报道。总之,这些结果为阐明GH3基因在多年生木本植物发育中的作用提供了理论基础,并为多种激素对茶树生长发育的协同作用提供了新的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/85b5/10822178/8b886195e2ba/12864_2024_10004_Fig1_HTML.jpg

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