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无规卷曲蛋白如何调控植物基因沉默。

How intrinsically disordered proteins order plant gene silencing.

机构信息

National Key Laboratory of Cotton Bio-breeding and Integrated Utilization (Henan University), State Key Laboratory of Crop Stress Adaptation and Improvement, School of Life Sciences, Henan University, Kaifeng 475004, China; Department of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843, USA.

Department of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843, USA.

出版信息

Trends Genet. 2024 Mar;40(3):260-275. doi: 10.1016/j.tig.2023.12.009. Epub 2024 Jan 30.

DOI:10.1016/j.tig.2023.12.009
PMID:38296708
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10932933/
Abstract

Intrinsically disordered proteins (IDPs) and proteins with intrinsically disordered regions (IDRs) possess low sequence complexity of amino acids and display non-globular tertiary structures. They can act as scaffolds, form regulatory hubs, or trigger biomolecular condensation to control diverse aspects of biology. Emerging evidence has recently implicated critical roles of IDPs and IDR-contained proteins in nuclear transcription and cytoplasmic post-transcriptional processes, among other molecular functions. We here summarize the concepts and organizing principles of IDPs. We then illustrate recent progress in understanding the roles of key IDPs in machineries that regulate transcriptional and post-transcriptional gene silencing (PTGS) in plants, aiming at highlighting new modes of action of IDPs in controlling biological processes.

摘要

无规则蛋白(IDPs)和含有无规则区域的蛋白(IDRs)具有低氨基酸序列复杂度,并呈现非球状的三级结构。它们可以作为支架,形成调控枢纽,或者触发生物分子凝聚,从而控制生物学的多个方面。最近的新证据表明,IDPs 和含有 IDR 的蛋白在核转录和细胞质转录后过程等分子功能中起着关键作用。我们在这里总结了 IDPs 的概念和组织原则。然后,我们举例说明了理解关键 IDPs 在调控植物转录和转录后基因沉默(PTGS)机制中的作用的最新进展,旨在强调 IDPs 控制生物过程的新作用模式。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b2c8/10932933/6548004c6012/nihms-1956500-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b2c8/10932933/9d24fca81715/nihms-1956500-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b2c8/10932933/4016f81ae4d7/nihms-1956500-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b2c8/10932933/b09d66b63b8e/nihms-1956500-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b2c8/10932933/6548004c6012/nihms-1956500-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b2c8/10932933/9d24fca81715/nihms-1956500-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b2c8/10932933/4016f81ae4d7/nihms-1956500-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b2c8/10932933/b09d66b63b8e/nihms-1956500-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b2c8/10932933/6548004c6012/nihms-1956500-f0004.jpg

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本文引用的文献

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Nat Commun. 2023 Dec 12;14(1):8224. doi: 10.1038/s41467-023-43969-7.
2
Tutorial: a guide for the selection of fast and accurate computational tools for the prediction of intrinsic disorder in proteins.教程:用于选择快速准确的计算工具预测蛋白质内无序性的指南。
Nat Protoc. 2023 Nov;18(11):3157-3172. doi: 10.1038/s41596-023-00876-x. Epub 2023 Sep 22.
3
Peptidyl-prolyl isomerase Cyclophilin71 promotes SERRATE phase separation and miRNA processing in .
肽基脯氨酰顺反异构酶亲环素 71 促进. 中的 SERRATE 相分离和 miRNA 加工。
Proc Natl Acad Sci U S A. 2023 Sep 5;120(36):e2305244120. doi: 10.1073/pnas.2305244120. Epub 2023 Aug 28.
4
Cold induction of nuclear FRIGIDA condensation in Arabidopsis.拟南芥中核内FRIGIDA蛋白冷凝物的冷诱导
Nature. 2023 Jul;619(7969):E27-E32. doi: 10.1038/s41586-023-06189-z. Epub 2023 Jul 12.
5
Reply to: Cold induction of nuclear FRIGIDA condensation in Arabidopsis.回复:拟南芥中核内FRIGIDA蛋白冷凝物的冷诱导
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Emerging roles of phase separation in plant transcription and chromatin organization.相分离在植物转录和染色质组织中的新兴作用。
Curr Opin Plant Biol. 2023 Oct;75:102387. doi: 10.1016/j.pbi.2023.102387. Epub 2023 Jun 11.
7
Towards sequence-based principles for protein phase separation predictions.基于序列的蛋白质相分离预测原则。
Curr Opin Chem Biol. 2023 Aug;75:102317. doi: 10.1016/j.cbpa.2023.102317. Epub 2023 May 17.
8
Cajal bodies: Evolutionarily conserved nuclear biomolecular condensates with properties unique to plants.卡哈尔体:具有植物特有性质的进化上保守的核生物分子凝聚物。
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Proc Natl Acad Sci U S A. 2023 Apr 4;120(14):e2216006120. doi: 10.1073/pnas.2216006120. Epub 2023 Mar 27.