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探索基于序列的语法,以揭示无规则蛋白区域功能的奥秘。

Towards Decoding the Sequence-Based Grammar Governing the Functions of Intrinsically Disordered Protein Regions.

机构信息

Department of Molecular and Cell Biology, University of California Berkeley, Berkeley, CA 94720, United States; The Howard Hughes Medical Institute, University of California Berkeley, Berkeley, CA 94720, United States.

Department of Molecular and Cell Biology, University of California Berkeley, Berkeley, CA 94720, United States.

出版信息

J Mol Biol. 2021 Jun 11;433(12):166724. doi: 10.1016/j.jmb.2020.11.023. Epub 2020 Nov 26.

Abstract

A substantial portion of the proteome consists of intrinsically disordered regions (IDRs) that do not fold into well-defined 3D structures yet perform numerous biological functions and are associated with a broad range of diseases. It has been a long-standing enigma how different IDRs successfully execute their specific functions. Further putting a spotlight on IDRs are recent discoveries of functionally relevant biomolecular assemblies, which in some cases form through liquid-liquid phase separation. At the molecular level, the formation of biomolecular assemblies is largely driven by weak, multivalent, but selective IDR-IDR interactions. Emerging experimental and computational studies suggest that the primary amino acid sequences of IDRs encode a variety of their interaction behaviors. In this review, we focus on findings and insights that connect sequence-derived features of IDRs to their conformations, propensities to form biomolecular assemblies, selectivity of interaction partners, functions in the context of physiology and disease, and regulation of function. We also discuss directions of future research to facilitate establishing a comprehensive sequence-function paradigm that will eventually allow prediction of selective interactions and specificity of function mediated by IDRs.

摘要

蛋白质组的很大一部分由固有无序区域(IDR)组成,这些区域没有折叠成明确的 3D 结构,但具有多种生物学功能,并与广泛的疾病相关。不同的 IDR 如何成功执行其特定功能一直是一个长期存在的谜。最近发现与功能相关的生物分子组装进一步成为焦点,在某些情况下,这些组装是通过液-液相分离形成的。在分子水平上,生物分子组装的形成主要是由弱的、多价的但具有选择性的 IDR-IDR 相互作用驱动的。新兴的实验和计算研究表明,IDR 的一级氨基酸序列编码了它们的各种相互作用行为。在这篇综述中,我们重点关注将 IDR 的序列衍生特征与其构象、形成生物分子组装的倾向、相互作用伙伴的选择性、在生理和疾病背景下的功能以及功能调节联系起来的发现和见解。我们还讨论了未来研究的方向,以促进建立一个全面的序列-功能范例,最终将允许预测由 IDR 介导的选择性相互作用和功能的特异性。

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