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大鼠肾单细胞悬液制备方法的比较。

Comparison of preparation methods of rat kidney single-cell suspensions.

机构信息

Department of Nephrology, First Medical Center of Chinese PLA General Hospital, National Key Laboratory of Kidney Diseases, National Clinical Research Center for Kidney Diseases, Military Logistics Research Key Laboratory of Field Disease Treatment, Beijing Key Laboratory of Kidney Disease Research, Beijing, 100853, China.

出版信息

Sci Rep. 2024 Feb 2;14(1):2785. doi: 10.1038/s41598-024-53270-2.

DOI:10.1038/s41598-024-53270-2
PMID:38307992
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10837120/
Abstract

Preparation of kidney tissue single-cell suspensions is the basis of single-cell sequencing, flow cytometry and primary cell culture, but it is difficult to prepare high quality whole kidney single-cell suspensions because of the complex structure of the kidney. We explored a technique called stepwise enzymatic digestion (StE) method for preparing a single-cell suspension of rat whole kidney tissue which contained three main steps. The first step is to cut the kidney into a homogenate. The second step is the digestion of renal tubules using Multi Tissue Dissociation Kit 2 and the last step is the digestion of glomeruli using type IV collagenase. We also compared it with two previous techniques, mechanical grinding method and simple enzymatic digestion method. The StE method had the advantages of high intrinsic glomerular cells and immune cells harvest rate, high singlets rate and high cell viability compared with the other two techniques. In conclusion, the StE method is feasible, highly efficient, and worthy of further research and development.

摘要

肾组织单细胞悬液的制备是单细胞测序、流式细胞术和原代细胞培养的基础,但由于肾脏结构复杂,很难制备高质量的全肾单细胞悬液。我们探索了一种称为分步酶消化(StE)的方法,用于制备包含三个主要步骤的大鼠全肾组织单细胞悬液。第一步是将肾脏切成匀浆。第二步是使用多组织解离试剂盒 2 消化肾小管,第三步是使用 IV 型胶原酶消化肾小球。我们还将其与两种先前的技术,机械研磨法和简单酶消化法进行了比较。与其他两种技术相比,StE 法具有内在肾小球细胞和免疫细胞收获率高、单细胞率高和细胞活力高的优点。总之,StE 法是可行的、高效的,值得进一步研究和开发。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c86e/10837120/c35cd3bc678c/41598_2024_53270_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c86e/10837120/e1493c92f662/41598_2024_53270_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c86e/10837120/735f69293665/41598_2024_53270_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c86e/10837120/b3547f8fe4e9/41598_2024_53270_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c86e/10837120/ca5e170c4bc4/41598_2024_53270_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c86e/10837120/c35cd3bc678c/41598_2024_53270_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c86e/10837120/e1493c92f662/41598_2024_53270_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c86e/10837120/735f69293665/41598_2024_53270_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c86e/10837120/b3547f8fe4e9/41598_2024_53270_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c86e/10837120/ca5e170c4bc4/41598_2024_53270_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c86e/10837120/c35cd3bc678c/41598_2024_53270_Fig5_HTML.jpg

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本文引用的文献

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Guidelines for DC preparation and flow cytometry analysis of mouse lymphohematopoietic tissues.小鼠淋巴血液组织的 DC 制备和流式细胞术分析指南。
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Isolation of Viable Single Cells With High Yield and Purity Using a Small Amount of Human Kidney Tissue Biopsy.使用少量人肾组织活检样本高产率、高纯度分离活的单细胞
Front Cell Dev Biol. 2022 May 10;10:822275. doi: 10.3389/fcell.2022.822275. eCollection 2022.
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Spatial and single-cell transcriptome analysis reveals changes in gene expression in response to drug perturbation in rat kidney.
空间和单细胞转录组分析揭示了大鼠肾脏中基因表达对药物扰动的响应变化。
DNA Res. 2022 Feb 27;29(2). doi: 10.1093/dnares/dsac007.
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Molecular insights into the early stage of glomerular injury in IgA nephropathy using single-cell RNA sequencing.利用单细胞RNA测序对IgA肾病肾小球损伤早期阶段的分子洞察
Kidney Int. 2022 Apr;101(4):752-765. doi: 10.1016/j.kint.2021.12.011. Epub 2021 Dec 28.
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How Many Cell Types Are in the Kidney and What Do They Do?肾脏中有多少种细胞类型,它们分别有什么功能?
Annu Rev Physiol. 2022 Feb 10;84:507-531. doi: 10.1146/annurev-physiol-052521-121841. Epub 2021 Nov 29.
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Preparation of single-cell suspensions of mouse glomeruli for high-throughput analysis.制备用于高通量分析的小鼠肾小球单细胞悬液。
Nat Protoc. 2021 Aug;16(8):4068-4083. doi: 10.1038/s41596-021-00578-2. Epub 2021 Jul 19.
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Nature. 2021 Jan;589(7841):281-286. doi: 10.1038/s41586-020-2941-1. Epub 2020 Nov 11.
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Complexities of the glomerular basement membrane.肾小球基底膜的复杂性。
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9
Systematic assessment of tissue dissociation and storage biases in single-cell and single-nucleus RNA-seq workflows.单细胞和单细胞核 RNA-seq 工作流程中组织解离和储存偏倚的系统评估。
Genome Biol. 2020 Jun 2;21(1):130. doi: 10.1186/s13059-020-02048-6.
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Single-cell RNA sequencing of human kidney.单细胞 RNA 测序人类肾脏。
Sci Data. 2020 Jan 2;7(1):4. doi: 10.1038/s41597-019-0351-8.