• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

4-氨基-1-(丙-2-炔-1-基)嘧啶-2(1H)-酮的晶体结构、 Hirshfeld表面分析、分子间相互作用能、能量框架及密度泛函理论计算

Crystal structure, Hirshfeld surface analysis, inter-molecular inter-action energies, energy frameworks and DFT calculations of 4-amino-1-(prop-2-yn-1-yl)pyrimidin-2(1)-one.

作者信息

Lahyaoui Mouad, Haoudi Amal, Kartah Badr Eddine, Mazzah Ahmed, Hökelek Tuncer, Mague Joel T, Kandri Rodi Youssef, Sebbar Nada Kheira

机构信息

Laboratoire de Chimie Organique Appliquée, Université Sidi Mohamed Ben Abdallah, Faculté des Sciences et Techniques, Route d'Immouzzer, BP 2202 Fez, Morocco.

Laboratory Of Applied Organic Chemistry, Sidi Mohamed Ben Abdellah University, Faculty Of Science And Technology, Road Immouzer, BP 2202 Fez, Morocco.

出版信息

Acta Crystallogr E Crystallogr Commun. 2023 Nov 21;79(Pt 12):1183-1189. doi: 10.1107/S2056989023009933. eCollection 2023 Dec 1.

DOI:10.1107/S2056989023009933
PMID:38313136
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10833410/
Abstract

In the title mol-ecule, CHNO, the pyrimidine ring is essentially planar, with the propynyl group rotated out of this plane by 15.31 (4)°. In the crystal, a tri-periodic network is formed by N-H⋯O, N-H⋯N and C-H⋯O hydrogen-bonding and slipped π-π stacking inter-actions, leading to narrow channels extending parallel to the axis. Hirshfeld surface analysis of the crystal structure reveals that the most important contributions for the crystal packing are from H⋯H (36.2%), H⋯C/C⋯H (20.9%), H⋯O/O⋯H (17.8%) and H⋯N/N⋯H (12.2%) inter-actions, showing that hydrogen-bonding and van der Waals inter-actions are the dominant inter-actions in the crystal packing. Evaluation of the electrostatic, dispersion and total energy frameworks indicates that the stabilization is dominated by the electrostatic energy contributions. The mol-ecular structure optimized by density functional theory (DFT) calculations at the B3LYP/6-311 G(d,p) level is compared with the experimentally determined structure in the solid state. The HOMO-LUMO behaviour was also elucidated to determine the energy gap.

摘要

在标题分子CHNO中,嘧啶环基本呈平面状,丙炔基旋转出该平面15.31 (4)°。在晶体中,通过N-H⋯O、N-H⋯N和C-H⋯O氢键以及滑移π-π堆积相互作用形成了一个三周期网络,导致平行于轴延伸的狭窄通道。对晶体结构的 Hirshfeld 表面分析表明,晶体堆积中最重要的贡献来自H⋯H(36.2%)、H⋯C/C⋯H(20.9%)、H⋯O/O⋯H(17.8%)和H⋯N/N⋯H(12.2%)相互作用,表明氢键和范德华相互作用是晶体堆积中的主要相互作用。对静电、色散和总能量框架的评估表明,稳定性主要由静电能量贡献主导。将在B3LYP/6-311 G(d,p)水平上通过密度泛函理论(DFT)计算优化的分子结构与固态下的实验测定结构进行了比较。还阐明了HOMO-LUMO行为以确定能隙。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5a5/10833410/b6f6b1439cc3/e-79-01183-fig12.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5a5/10833410/b280bdbcc33b/e-79-01183-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5a5/10833410/90fc67dc749f/e-79-01183-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5a5/10833410/24eecea1b470/e-79-01183-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5a5/10833410/52954a1e8e99/e-79-01183-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5a5/10833410/0d64be192f6e/e-79-01183-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5a5/10833410/9218194ca0f2/e-79-01183-fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5a5/10833410/af5db5cf0833/e-79-01183-fig7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5a5/10833410/b67eb0dba788/e-79-01183-fig8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5a5/10833410/1bb43ac4ce3c/e-79-01183-fig9.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5a5/10833410/cee0fec84f71/e-79-01183-fig10.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5a5/10833410/70a05cf57077/e-79-01183-fig11.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5a5/10833410/b6f6b1439cc3/e-79-01183-fig12.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5a5/10833410/b280bdbcc33b/e-79-01183-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5a5/10833410/90fc67dc749f/e-79-01183-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5a5/10833410/24eecea1b470/e-79-01183-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5a5/10833410/52954a1e8e99/e-79-01183-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5a5/10833410/0d64be192f6e/e-79-01183-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5a5/10833410/9218194ca0f2/e-79-01183-fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5a5/10833410/af5db5cf0833/e-79-01183-fig7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5a5/10833410/b67eb0dba788/e-79-01183-fig8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5a5/10833410/1bb43ac4ce3c/e-79-01183-fig9.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5a5/10833410/cee0fec84f71/e-79-01183-fig10.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5a5/10833410/70a05cf57077/e-79-01183-fig11.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5a5/10833410/b6f6b1439cc3/e-79-01183-fig12.jpg

相似文献

1
Crystal structure, Hirshfeld surface analysis, inter-molecular inter-action energies, energy frameworks and DFT calculations of 4-amino-1-(prop-2-yn-1-yl)pyrimidin-2(1)-one.4-氨基-1-(丙-2-炔-1-基)嘧啶-2(1H)-酮的晶体结构、 Hirshfeld表面分析、分子间相互作用能、能量框架及密度泛函理论计算
Acta Crystallogr E Crystallogr Commun. 2023 Nov 21;79(Pt 12):1183-1189. doi: 10.1107/S2056989023009933. eCollection 2023 Dec 1.
2
Crystal structure, Hirshfeld surface analysis and inter-action energy and DFT studies of 1-methyl-3-(prop-2-yn-1-yl)-2,3-di-hydro-1-1,3-benzo-diazol-2-one.1-甲基-3-(丙-2-炔-1-基)-2,3-二氢-1H-1,3-苯并二唑-2-酮的晶体结构、 Hirshfeld表面分析、相互作用能及密度泛函理论研究
Acta Crystallogr E Crystallogr Commun. 2019 Nov 29;75(Pt 12):1940-1946. doi: 10.1107/S2056989019015779. eCollection 2019 Dec 1.
3
Crystal structure, Hirshfeld surface analysis, crystal voids, inter-action energy calculations and energy frameworks and DFT calculations of ethyl 2-cyano-3-(3-hy-droxy-5-methyl-1-pyrazol-4-yl)-3-phen-yl-propano-ate.2-氰基-3-(3-羟基-5-甲基-1-吡唑-4-基)-3-苯基丙酸乙酯的晶体结构、 Hirshfeld表面分析、晶体空隙、相互作用能计算、能量框架及密度泛函理论计算
Acta Crystallogr E Crystallogr Commun. 2024 Jan 31;80(Pt 2):240-246. doi: 10.1107/S2056989024000744. eCollection 2024 Feb 1.
4
Crystal structure, Hirshfeld surface analysis, calculations of inter-molecular inter-action energies and energy frameworks and the DFT-optimized mol-ecular structure of 1-[(1-butyl-1-1,2,3-triazol-4-yl)meth-yl]-3-(prop-1-en-2-yl)-1-benzimidazol-2-one.1-[(1-丁基-1H-1,2,3-三唑-4-基)甲基]-3-(1-丙烯-2-基)-1-苯并咪唑-2-酮的晶体结构、 Hirshfeld表面分析、分子间相互作用能和能量框架的计算以及密度泛函理论(DFT)优化的分子结构
Acta Crystallogr E Crystallogr Commun. 2024 May 14;80(Pt 6):601-606. doi: 10.1107/S2056989024004043. eCollection 2024 May 1.
5
Crystal structure determination, Hirshfeld surface, crystal void, inter-molecular inter-action energy analyses, as well as DFT and energy framework calculations of 2-(4-oxo-4,5-di-hydro-1-pyra-zolo[3,4-]pyrimidin-1-yl)acetic acid.2-(4-氧代-4,5-二氢-1-吡唑并[3,4-d]嘧啶-1-基)乙酸的晶体结构测定、 Hirshfeld表面、晶体空隙、分子间相互作用能分析以及密度泛函理论(DFT)和能量框架计算
Acta Crystallogr E Crystallogr Commun. 2022 Aug 31;78(Pt 9):953-960. doi: 10.1107/S2056989022008489. eCollection 2022 Sep 1.
6
Crystal structure, Hirshfeld surface and crystal void analysis, inter-molecular inter-action energies, DFT calculations and energy frameworks of 2-benzo[][1,4]thia-zin-3(4)-one 1,1-dioxide.2-苯并[][1,4]噻嗪-3(4)-酮1,1-二氧化物的晶体结构、 Hirshfeld表面与晶体空隙分析、分子间相互作用能、密度泛函理论计算及能量框架
Acta Crystallogr E Crystallogr Commun. 2023 Oct 19;79(Pt 11):1037-1043. doi: 10.1107/S205698902300868X. eCollection 2023 Nov 1.
7
Crystal structure, Hirshfeld surface analysis, crystal voids, inter-action energy calculations and energy frameworks, and DFT calculations of 1-(4-methyl-benz-yl)in-do-line-2,3-dione.1-(4-甲基苄基)吲哚啉-2,3-二酮的晶体结构、 Hirshfeld表面分析、晶体空隙、相互作用能计算与能量框架以及密度泛函理论计算
Acta Crystallogr E Crystallogr Commun. 2024 Jan 31;80(Pt 2):232-239. doi: 10.1107/S2056989024000756. eCollection 2024 Feb 1.
8
Crystal structure, Hirshfeld surface analysis and inter-action energy and DFT studies of 2-chloro-ethyl 2-oxo-1-(prop-2-yn-1-yl)-1,2-di-hydro-quinoline-4-carboxyl-ate.2-氯乙基 2-氧代-1-(丙-2-炔-1-基)-1,2-二氢喹啉-4-羧酸酯的晶体结构、 Hirshfeld 表面分析、相互作用能及密度泛函理论研究
Acta Crystallogr E Crystallogr Commun. 2019 Sep 6;75(Pt 10):1411-1417. doi: 10.1107/S2056989019012283. eCollection 2019 Oct 1.
9
Crystal structure, Hirshfeld surface analysis, inter-action energy and DFT calculations and energy frameworks of methyl 6-chloro-1-methyl-2-oxo-1,2-di-hydro-quinoline-4-carboxyl-ate.6-氯-1-甲基-2-氧代-1,2-二氢喹啉-4-羧酸甲酯的晶体结构、 Hirshfeld表面分析、相互作用能、密度泛函理论计算及能量框架
Acta Crystallogr E Crystallogr Commun. 2022 Mar 22;78(Pt 4):425-432. doi: 10.1107/S2056989022002912. eCollection 2022 Apr 1.
10
Crystal structure, Hirshfeld surface analysis and inter-action energy and DFT studies of 3-{(2)-2-[(2,4-di-chloro-phen-yl)methyl-idene]-3-oxo-3,4-di-hydro-2-1,4-benzo-thia-zin-4-yl}propane-nitrile.3-{(2)-2-[(2,4-二氯苯基)亚甲基]-3-氧代-3,4-二氢-2H-1,4-苯并噻嗪-4-基}丙腈的晶体结构、 Hirshfeld表面分析、相互作用能及密度泛函理论研究
Acta Crystallogr E Crystallogr Commun. 2019 May 3;75(Pt 6):721-727. doi: 10.1107/S2056989019005966. eCollection 2019 Jun 1.

本文引用的文献

1
: a program for Hirshfeld surface analysis, visualization and quantitative analysis of molecular crystals.用于分子晶体的 Hirshfeld 表面分析、可视化和定量分析的程序。
J Appl Crystallogr. 2021 Apr 27;54(Pt 3):1006-1011. doi: 10.1107/S1600576721002910. eCollection 2021 Jun 1.
2
model energies and energy frameworks: extension to metal coordination compounds, organic salts, solvates and open-shell systems.模型能量与能量框架:扩展至金属配位化合物、有机盐、溶剂化物及开壳层体系
IUCrJ. 2017 Jul 4;4(Pt 5):575-587. doi: 10.1107/S205225251700848X. eCollection 2017 Sep 1.
3
The Cambridge Structural Database.
剑桥结构数据库。
Acta Crystallogr B Struct Sci Cryst Eng Mater. 2016 Apr;72(Pt 2):171-9. doi: 10.1107/S2052520616003954. Epub 2016 Apr 1.
4
Triazole double-headed ribonucleosides as inhibitors of eosinophil derived neurotoxin.三氮唑双头核苷作为嗜酸性粒细胞衍生神经毒素的抑制剂。
Bioorg Chem. 2015 Dec;63:152-65. doi: 10.1016/j.bioorg.2015.10.007. Epub 2015 Oct 31.
5
Crystal structure, Hirshfeld surfaces and DFT computation of NLO active (2E)-2-(ethoxycarbonyl)-3-[(1-methoxy-1-oxo-3-phenylpropan-2-yl)amino] prop-2-enoic acid.NLO活性的(2E)-2-(乙氧羰基)-3-[(1-甲氧基-1-氧代-3-苯基丙-2-基)氨基]丙烯酸的晶体结构、 Hirshfeld表面和DFT计算
Spectrochim Acta A Mol Biomol Spectrosc. 2016 Jan 15;153:625-36. doi: 10.1016/j.saa.2015.09.002. Epub 2015 Sep 6.
6
Quantitative analysis of intermolecular interactions in orthorhombic rubrene.正交并五苯中分子间相互作用的定量分析。
IUCrJ. 2015 Aug 14;2(Pt 5):563-74. doi: 10.1107/S2052252515012130. eCollection 2015 Sep 1.
7
Accurate and Efficient Model Energies for Exploring Intermolecular Interactions in Molecular Crystals.用于探索分子晶体中分子间相互作用的精确高效模型能量
J Phys Chem Lett. 2014 Dec 18;5(24):4249-55. doi: 10.1021/jz502271c. Epub 2014 Nov 26.
8
Comparison of silver and molybdenum microfocus X-ray sources for single-crystal structure determination.用于单晶结构测定的银和钼微焦点X射线源的比较。
J Appl Crystallogr. 2015 Jan 30;48(Pt 1):3-10. doi: 10.1107/S1600576714022985. eCollection 2015 Feb 1.
9
Energy frameworks: insights into interaction anisotropy and the mechanical properties of molecular crystals.能量框架:对相互作用各向异性和分子晶体力学性质的见解。
Chem Commun (Camb). 2015 Mar 4;51(18):3735-8. doi: 10.1039/c4cc09074h.
10
Biomimetic polyorganosiloxanes: model compounds for new materials.
Dalton Trans. 2014 Jun 7;43(21):7734-46. doi: 10.1039/c4dt00554f. Epub 2014 Apr 8.