Division of Population Genetics, Department of Zoology, Stockholm University, 106 91 Stockholm, Sweden.
Systematic Biology, Department of Organismal Biology, Uppsala University, 752 36 Uppsala, Sweden.
Genome Biol Evol. 2024 Mar 2;16(3). doi: 10.1093/gbe/evae034.
The filamentous fungus Podospora anserina is a model organism used extensively in the study of molecular biology, senescence, prion biology, meiotic drive, mating-type chromosome evolution, and plant biomass degradation. It has recently been established that P. anserina is a member of a complex of 7 closely related species. In addition to P. anserina, high-quality genomic resources are available for 2 of these taxa. Here, we provide chromosome-level annotated assemblies of the 4 remaining species of the complex, as well as a comprehensive data set of annotated assemblies from a total of 28 Podospora genomes. We find that all 7 species have genomes of around 35 Mb arranged in 7 chromosomes that are mostly collinear and less than 2% divergent from each other at genic regions. We further attempt to resolve their phylogenetic relationships, finding significant levels of phylogenetic conflict as expected from a rapid and recent diversification.
栓菌是一种丝状真菌,是分子生物学、衰老、朊病毒生物学、减数分裂驱动、交配型染色体进化和植物生物质降解研究中广泛使用的模式生物。最近已经确定,栓菌是一个由 7 个密切相关的物种组成的复合体的成员。除了栓菌,其中 2 个分类群还拥有高质量的基因组资源。在这里,我们提供了该复合体中其余 4 个物种的染色体水平注释组装,以及总共 28 个栓菌基因组的注释组装的综合数据集。我们发现,所有 7 个物种的基因组大小约为 35 Mb,排列在 7 条染色体中,这些染色体大部分是共线性的,在基因区域彼此之间的差异不到 2%。我们进一步尝试解决它们的系统发育关系,发现正如预期的那样,存在着大量的系统发育冲突,这是由快速和近期的多样化造成的。