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灰霉座壳属 4 个种复合体的高质量基因组组装。

High-Quality Genome Assemblies of 4 Members of the Podospora anserina Species Complex.

机构信息

Division of Population Genetics, Department of Zoology, Stockholm University, 106 91 Stockholm, Sweden.

Systematic Biology, Department of Organismal Biology, Uppsala University, 752 36 Uppsala, Sweden.

出版信息

Genome Biol Evol. 2024 Mar 2;16(3). doi: 10.1093/gbe/evae034.

Abstract

The filamentous fungus Podospora anserina is a model organism used extensively in the study of molecular biology, senescence, prion biology, meiotic drive, mating-type chromosome evolution, and plant biomass degradation. It has recently been established that P. anserina is a member of a complex of 7 closely related species. In addition to P. anserina, high-quality genomic resources are available for 2 of these taxa. Here, we provide chromosome-level annotated assemblies of the 4 remaining species of the complex, as well as a comprehensive data set of annotated assemblies from a total of 28 Podospora genomes. We find that all 7 species have genomes of around 35 Mb arranged in 7 chromosomes that are mostly collinear and less than 2% divergent from each other at genic regions. We further attempt to resolve their phylogenetic relationships, finding significant levels of phylogenetic conflict as expected from a rapid and recent diversification.

摘要

栓菌是一种丝状真菌,是分子生物学、衰老、朊病毒生物学、减数分裂驱动、交配型染色体进化和植物生物质降解研究中广泛使用的模式生物。最近已经确定,栓菌是一个由 7 个密切相关的物种组成的复合体的成员。除了栓菌,其中 2 个分类群还拥有高质量的基因组资源。在这里,我们提供了该复合体中其余 4 个物种的染色体水平注释组装,以及总共 28 个栓菌基因组的注释组装的综合数据集。我们发现,所有 7 个物种的基因组大小约为 35 Mb,排列在 7 条染色体中,这些染色体大部分是共线性的,在基因区域彼此之间的差异不到 2%。我们进一步尝试解决它们的系统发育关系,发现正如预期的那样,存在着大量的系统发育冲突,这是由快速和近期的多样化造成的。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/60f8/10936905/1b4ef9ec896e/evae034f1.jpg

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