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蒙特卡罗模拟得出的水合焓与熵

Enthalpies and entropies of hydration from Monte Carlo simulations.

作者信息

Jorgensen William L

机构信息

Department of Chemistry, Yale University, New Haven, Connecticut, 06520-8107, USA.

出版信息

Phys Chem Chem Phys. 2024 Mar 6;26(10):8141-8147. doi: 10.1039/d4cp00297k.

DOI:10.1039/d4cp00297k
PMID:38412420
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10916384/
Abstract

The changes in free energy, enthalpy, and entropy for transfer of a solute from the gas phase into solution are the fundamental thermodynamic quantities that characterize the solvation process. Owing to the development of methods based on free-energy perturbation theory, computation of free energies of solvation has become routine in conjunction with Monte Carlo (MC) statistical mechanics and molecular dynamics (MD) simulations. Computation of the enthalpy change and by inference the entropy change is more challenging. Two methods are considered in this work corresponding to direct averaging for the solvent and solution and to computing the temperature derivative of the free energy in the van't Hoff approach. The application is for neutral organic solutes in TIP4P water using long MC simulations to improve precision. Definitive results are also provided for pure TIP4P water. While the uncertainty in computed free energies of hydration is 0.05 kcal mol, it is 0.4 kcal mol for the enthalpy changes from either van't Hoff plots or the direct method with sampling for 5 billion MC configurations. Partial molar volumes of hydration are also computed by the direct method; they agree well with experimental data with an average deviation of 3 cm mol. In addition, the results permit breakdown of the errors in the free energy changes from the OPLS-AA force field into their enthalpic and entropic components. The excess hydrophobicity of organic solutes is enthalpic in origin.

摘要

溶质从气相转移到溶液中时自由能、焓和熵的变化是表征溶剂化过程的基本热力学量。由于基于自由能微扰理论的方法的发展,结合蒙特卡罗(MC)统计力学和分子动力学(MD)模拟,溶剂化自由能的计算已成为常规操作。焓变的计算以及由此推断的熵变的计算更具挑战性。在这项工作中考虑了两种方法,一种对应于对溶剂和溶液进行直接平均,另一种对应于在范特霍夫方法中计算自由能的温度导数。应用于TIP4P水中的中性有机溶质,使用长时间的MC模拟来提高精度。还给出了纯TIP4P水的确切结果。虽然计算得到的水合自由能的不确定性为0.05 kcal/mol,但通过范特霍夫图或对50亿个MC构型进行采样的直接方法得到的焓变的不确定性为0.4 kcal/mol。水合偏摩尔体积也通过直接方法计算;它们与实验数据吻合良好,平均偏差为3 cm³/mol。此外,结果允许将OPLS - AA力场中自由能变化的误差分解为其焓和熵的分量。有机溶质的过量疏水性源于焓。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0e23/10916384/954e720475ba/d4cp00297k-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0e23/10916384/de50d99f290d/d4cp00297k-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0e23/10916384/b572eb6a0979/d4cp00297k-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0e23/10916384/6526fddd88ae/d4cp00297k-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0e23/10916384/f5595358bbe4/d4cp00297k-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0e23/10916384/954e720475ba/d4cp00297k-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0e23/10916384/de50d99f290d/d4cp00297k-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0e23/10916384/b572eb6a0979/d4cp00297k-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0e23/10916384/6526fddd88ae/d4cp00297k-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0e23/10916384/f5595358bbe4/d4cp00297k-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0e23/10916384/954e720475ba/d4cp00297k-f5.jpg

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