• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

溶剂化理论为解释稀有气体水合的疏水熵损失提供了一个分子解释。

Solvation theory to provide a molecular interpretation of the hydrophobic entropy loss of noble-gas hydration.

机构信息

Manchester Interdisciplinary Biocentre, The University of Manchester, 131 Princess Street, Manchester M1 7DN, UK.

出版信息

J Phys Condens Matter. 2010 Jul 21;22(28):284108. doi: 10.1088/0953-8984/22/28/284108. Epub 2010 Jun 21.

DOI:10.1088/0953-8984/22/28/284108
PMID:21399280
Abstract

An equation for the chemical potential of a dilute aqueous solution of noble gases is derived in terms of energies, force and torque magnitudes, and solute and water coordination numbers, quantities which are all measured from an equilibrium molecular dynamics simulation. Also derived are equations for the Gibbs free energy, enthalpy and entropy of hydration for the Henry's law process, the Ostwald process, and a third proposed process going from an arbitrary concentration in the gas phase to the equivalent mole fraction in aqueous solution which has simpler expressions for the enthalpy and entropy changes. Good agreement with experimental hydration free energies is obtained in the TIP4P and SPC/E water models although the solute's force field appears to affect the enthalpies and entropies obtained. In contrast to other methods, the approach gives a complete breakdown of the entropy for every degree of freedom and makes possible a direct structural interpretation of the well-known entropy loss accompanying the hydrophobic hydration of small non-polar molecules under ambient conditions. The noble-gas solutes experience only a small reduction in their vibrational entropy, with larger solutes experiencing a greater loss. The vibrational and librational entropy components of water actually increase but only marginally, negating any idea of water confinement. The term that contributes the most to the hydrophobic entropy loss is found to be water's orientational term which quantifies the number of orientational minima per water molecule and how many ways the whole hydrogen-bond network can form. These findings help resolve contradictory deductions from experiments that water structure around non-polar solutes is similar to bulk water in some ways but different in others. That the entropy loss lies in water's rotational entropy contrasts with other claims that it largely lies in water's translational entropy, but this apparent discrepancy arises because of different coordinate definitions and reference frames used to define the entropy terms.

摘要

从平衡分子动力学模拟中测量的能量、力和扭矩大小以及溶质和水的配位数,推导出稀水溶液中稀有气体化学势的方程。还推导出亨利定律过程、奥斯特瓦尔德过程和第三个提议过程的吉布斯自由能、焓和水合熵的方程,该过程从气相中的任意浓度到水溶液中的等效摩尔分数。在 TIP4P 和 SPC/E 水模型中,与实验水合自由能得到很好的一致,尽管溶质的力场似乎影响得到的焓和熵。与其他方法相比,该方法为每个自由度提供了熵的完整分解,并使对小非极性分子在环境条件下的疏水性水合伴随的已知熵损失的直接结构解释成为可能。稀有气体溶质的振动熵仅略有减少,较大的溶质损失更大。水的振动和旋转熵分量实际上增加,但只是略有增加,否定了任何关于水限制的想法。对疏水性熵损失贡献最大的是水的取向项,它量化了每个水分子的取向极小值数量以及整个氢键网络可以形成的方式数量。这些发现有助于解决实验中得出的相互矛盾的推论,即非极性溶质周围的水结构在某些方面与体相水相似,但在其他方面则不同。熵损失在于水的旋转熵,这与其他声称它主要在于水的平移熵的说法形成对比,但这种明显的差异是由于用于定义熵项的不同坐标定义和参考系引起的。

相似文献

1
Solvation theory to provide a molecular interpretation of the hydrophobic entropy loss of noble-gas hydration.溶剂化理论为解释稀有气体水合的疏水熵损失提供了一个分子解释。
J Phys Condens Matter. 2010 Jul 21;22(28):284108. doi: 10.1088/0953-8984/22/28/284108. Epub 2010 Jun 21.
2
Unraveling water's entropic mysteries: a unified view of nonpolar, polar, and ionic hydration.揭开水分子熵的奥秘:非极性、极性和离子水化的统一观点。
Acc Chem Res. 2008 Aug;41(8):957-67. doi: 10.1021/ar7001478.
3
Enthalpy-entropy contributions to salt and osmolyte effects on molecular-scale hydrophobic hydration and interactions.焓熵对盐和渗透溶质影响分子尺度疏水水合及相互作用的贡献。
J Phys Chem B. 2008 May 8;112(18):5661-70. doi: 10.1021/jp073485n.
4
Entropy and enthalpy convergence of hydrophobic solvation beyond the hard-sphere limit.疏水溶剂化超过硬球极限的熵和焓收敛。
J Chem Phys. 2011 Feb 7;134(5):055105. doi: 10.1063/1.3530585.
5
Entropic cost of protein-ligand binding and its dependence on the entropy in solution.蛋白质-配体结合的熵成本及其对溶液中熵的依赖性。
J Phys Chem B. 2009 Apr 30;113(17):5871-84. doi: 10.1021/jp809968p.
6
Electrostatic polarization effects and hydrophobic hydration in ethanol-water solutions from molecular dynamics simulations.基于分子动力学模拟的乙醇 - 水溶液中的静电极化效应和疏水水合作用
J Phys Chem B. 2009 Jan 22;113(3):767-78. doi: 10.1021/jp807053p.
7
Water's hydrogen bonds in the hydrophobic effect: a simple model.疏水效应中水分子的氢键:一个简单模型。
J Phys Chem B. 2005 Dec 15;109(49):23611-7. doi: 10.1021/jp0526750.
8
Hydrogen bond strength and network structure effects on hydration of non-polar molecules.氢键强度和网络结构对非极性分子水合作用的影响。
Phys Chem Chem Phys. 2011 Feb 21;13(7):2748-57. doi: 10.1039/c0cp01701a. Epub 2010 Dec 10.
9
Comparison of charge models for fixed-charge force fields: small-molecule hydration free energies in explicit solvent.固定电荷力场中电荷模型的比较:明确溶剂中的小分子水合自由能
J Phys Chem B. 2007 Mar 8;111(9):2242-54. doi: 10.1021/jp0667442. Epub 2007 Feb 10.
10
Redox entropy of plastocyanin: developing a microscopic view of mesoscopic polar solvation.质体蓝素的氧化还原熵:构建介观极性溶剂化的微观视角
J Chem Phys. 2008 Apr 21;128(15):155106. doi: 10.1063/1.2904879.

引用本文的文献

1
Energy-entropy multiscale cell correlation method to predict toluene-water log  in the SAMPL9 challenge.用于在SAMPL9挑战中预测甲苯-水对数的能量-熵多尺度细胞相关方法。
Phys Chem Chem Phys. 2023 Oct 18;25(40):27524-27531. doi: 10.1039/d3cp03076h.
2
Total free energy analysis of fully hydrated proteins.全水合蛋白质的总自由能分析。
Proteins. 2023 Jan;91(1):74-90. doi: 10.1002/prot.26411. Epub 2022 Aug 25.
3
Energy-entropy prediction of octanol-water logP of SAMPL7 N-acyl sulfonamide bioisosters.SAMPL7 N-酰基磺酰胺类生物等排物辛醇-水分配系数的能量熵预测。
J Comput Aided Mol Des. 2021 Jul;35(7):831-840. doi: 10.1007/s10822-021-00401-w. Epub 2021 Jul 10.
4
Statistical Inference for Ergodic Algorithmic Model (EAM), Applied to Hydrophobic Hydration Processes.遍历算法模型(EAM)的统计推断,应用于疏水水合过程。
Entropy (Basel). 2021 Jun 1;23(6):700. doi: 10.3390/e23060700.
5
Analytical 2-Dimensional Model of Nonpolar and Ionic Solvation in Water.二维非极性和离子在水中溶剂化的分析模型。
J Phys Chem B. 2021 Feb 25;125(7):1861-1873. doi: 10.1021/acs.jpcb.0c10329. Epub 2021 Feb 4.
6
Entropy of Simulated Liquids Using Multiscale Cell Correlation.基于多尺度细胞相关性的模拟液体熵
Entropy (Basel). 2019 Jul 31;21(8):750. doi: 10.3390/e21080750.
7
Hydrophobic Hydration Processes: Intensity Entropy and Null Thermal Free Energy and Density Entropy and Motive Free Energy.疏水水合过程:强度熵与零热自由能以及密度熵与动力自由能。
ACS Omega. 2019 Nov 11;4(22):19526-19547. doi: 10.1021/acsomega.9b01440. eCollection 2019 Nov 26.
8
Hydrophobic Hydration Processes. I: Dual-Structure Partition Function for Biphasic Aqueous Systems.疏水水合过程。I:双相水体系的双结构配分函数。
ACS Omega. 2018 Nov 8;3(11):15043-15065. doi: 10.1021/acsomega.8b01685. eCollection 2018 Nov 30.
9
Binding Thermodynamics and Kinetics Calculations Using Chemical Host and Guest: A Comprehensive Picture of Molecular Recognition.使用化学主体和客体的结合热力学与动力学计算:分子识别的全景图
J Chem Theory Comput. 2018 Jan 9;14(1):303-318. doi: 10.1021/acs.jctc.7b00899. Epub 2017 Dec 14.
10
Assessing the accuracy of inhomogeneous fluid solvation theory in predicting hydration free energies of simple solutes.评估非均匀流体溶剂化理论预测简单溶质水合自由能的准确性。
J Phys Chem B. 2013 Jul 11;117(27):8232-44. doi: 10.1021/jp4042233. Epub 2013 Jun 26.