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紫檀芪对肝癌基因表达的影响:一项计算机模拟分析

Influence of Pterostilbene on Gene Expression in Liver Cancer: An In Silico Analysis.

作者信息

Prasad Monisha, Tamil Selvan Silambarasan, Shanmugam Rajeshkumar

机构信息

Centre for Global Health Research, Saveetha Medical College and Hospital, Saveetha Institute of Medical and Technical Sciences, Chennai, IND.

Nanobiomedicine Lab, Centre for Global Health Research, Saveetha Medical College and Hospital, Saveetha Institute of Medical and Technical Sciences, Chennai, IND.

出版信息

Cureus. 2024 Jan 28;16(1):e53098. doi: 10.7759/cureus.53098. eCollection 2024 Jan.

DOI:10.7759/cureus.53098
PMID:38414698
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10898499/
Abstract

Background Liver cancer, in particular, is a serious threat to global health and has few viable treatments. One natural molecule that shows potential in cancer therapy is pterostilbene, especially for hepatocellular carcinoma (HCC). The molecular details of pterostilbene's interactions with liver cancer are uncovered in this study using an in silico method. Methodology This study determines the differentially expressed genes (DEGs) in HCC and the way pterostilbene affects them using data from Gene Expression Omnibus (GEO) datasets. To identify the intricate linkages and possible treatment targets, network pharmacology, protein-protein interaction (PPI) analysis, and pathway enrichment investigations were performed. Results The study revealed complex relationships between pterostilbene and liver cancer, identified important DEGs in HCC, and showed enriched pathways. Pterostilbene shows promise as a target for therapeutic approaches in HCC due to its modulation of important signaling pathways. Conclusions This work offers an extensive knowledge of pterostilbene's potential in liver cancer, despite intrinsic computational limitations. In addition to the importance of experimental validation, the pathways and DEGs that have been found provide insightful information for future investigation, highlighting the ongoing research that is necessary to create targeted therapeutics for HCC.

摘要

背景 肝癌尤其对全球健康构成严重威胁,且可行的治疗方法寥寥无几。一种在癌症治疗中显示出潜力的天然分子是紫檀芪,尤其是对肝细胞癌(HCC)。本研究采用计算机模拟方法揭示了紫檀芪与肝癌相互作用的分子细节。

方法 本研究利用基因表达综合数据库(GEO)的数据,确定了HCC中的差异表达基因(DEG)以及紫檀芪对它们的影响方式。为了识别复杂的联系和可能的治疗靶点,进行了网络药理学、蛋白质-蛋白质相互作用(PPI)分析和通路富集研究。

结果 该研究揭示了紫檀芪与肝癌之间的复杂关系,确定了HCC中的重要DEG,并显示了富集的通路。由于紫檀芪对重要信号通路的调节作用,它有望成为HCC治疗方法的靶点。

结论 尽管存在固有的计算局限性,但这项工作提供了关于紫檀芪在肝癌中潜力的广泛知识。除了实验验证的重要性外,已发现的通路和DEG为未来的研究提供了有见地的信息,突出了为HCC开发靶向治疗所需的持续研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/738f/10898499/58d97c9ee376/cureus-0016-00000053098-i03.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/738f/10898499/f3c53e70ff00/cureus-0016-00000053098-i01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/738f/10898499/234ee71ab034/cureus-0016-00000053098-i02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/738f/10898499/58d97c9ee376/cureus-0016-00000053098-i03.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/738f/10898499/f3c53e70ff00/cureus-0016-00000053098-i01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/738f/10898499/234ee71ab034/cureus-0016-00000053098-i02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/738f/10898499/58d97c9ee376/cureus-0016-00000053098-i03.jpg

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本文引用的文献

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Int J Mol Sci. 2023 Jun 3;24(11):9707. doi: 10.3390/ijms24119707.
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Identification of Differentially Expressed Genes Associated with the Prognosis and Diagnosis of Hepatocellular Carcinoma by Integrated Bioinformatics Analysis.基于整合生物信息学分析鉴定与肝细胞癌预后和诊断相关的差异表达基因。
Biomed Res Int. 2022 Oct 22;2022:4237633. doi: 10.1155/2022/4237633. eCollection 2022.
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Machine Learning in Drug Discovery: A Review.
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Artif Intell Rev. 2022;55(3):1947-1999. doi: 10.1007/s10462-021-10058-4. Epub 2021 Aug 11.
4
Pterostilbene inhibits gallbladder cancer progression by suppressing the PI3K/Akt pathway.紫檀芪通过抑制 PI3K/Akt 通路抑制胆囊癌进展。
Sci Rep. 2021 Feb 23;11(1):4391. doi: 10.1038/s41598-021-83924-4.
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Erratum: Global cancer statistics 2018: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries.勘误:《2018年全球癌症统计数据:全球癌症观察站对185个国家36种癌症的发病率和死亡率估计》
CA Cancer J Clin. 2020 Jul;70(4):313. doi: 10.3322/caac.21609. Epub 2020 Apr 6.
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Molecular Signaling Pathways and Therapeutic Targets in Hepatocellular Carcinoma.肝细胞癌中的分子信号通路与治疗靶点
Cancers (Basel). 2020 Feb 20;12(2):491. doi: 10.3390/cancers12020491.
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