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发育沙漏:数值演化验证和动力系统理论阐明。

Developmental hourglass: Verification by numerical evolution and elucidation by dynamical-systems theory.

机构信息

Center for Biosystems Dynamics Research, RIKEN, Kobe, Japan.

Niels Bohr Institute, University of Copenhagen, Copenhagen, Denmark.

出版信息

PLoS Comput Biol. 2024 Feb 29;20(2):e1011867. doi: 10.1371/journal.pcbi.1011867. eCollection 2024 Feb.

Abstract

Determining the general laws between evolution and development is a fundamental biological challenge. Developmental hourglasses have attracted increased attention as candidates for such laws, but the necessity of their emergence remains elusive. We conducted evolutionary simulations of developmental processes to confirm the emergence of the developmental hourglass and unveiled its establishment. We considered organisms consisting of cells containing identical gene networks that control morphogenesis and evolved them under selection pressure to induce more cell types. By computing the similarity between the spatial patterns of gene expression of two species that evolved from a common ancestor, a developmental hourglass was observed, that is, there was a correlation peak in the intermediate stage of development. The fraction of pleiotropic genes increased, whereas the variance in individuals decreased, consistent with previous experimental reports. Reduction of the unavoidable variance by initial or developmental noise, essential for survival, was achieved up to the hourglass bottleneck stage, followed by diversification in developmental processes, whose timing is controlled by the slow expression dynamics conserved among organisms sharing the hourglass. This study suggests why developmental hourglasses are observed within a certain phylogenetic range of species.

摘要

确定进化和发育之间的普遍规律是一个基本的生物学挑战。发育沙漏作为这些规律的候选者引起了越来越多的关注,但它们出现的必要性仍然难以捉摸。我们进行了发育过程的进化模拟,以确认发育沙漏的出现并揭示其建立。我们考虑了由包含控制形态发生的相同基因网络的细胞组成的生物体,并在选择压力下对其进行进化以诱导更多的细胞类型。通过计算从共同祖先进化而来的两个物种的基因表达空间模式之间的相似性,观察到了发育沙漏,即在发育的中间阶段存在相关性峰值。多效基因的分数增加,而个体的方差减小,这与之前的实验报告一致。初始或发育噪声对生存至关重要的不可避免的方差的减少一直持续到沙漏瓶颈阶段,然后在发育过程中多样化,其时间由在共享沙漏的生物体中保守的缓慢表达动力学控制。这项研究表明了为什么在特定的物种系统发育范围内观察到发育沙漏。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/08fd/10903806/f5cafc0e90d9/pcbi.1011867.g001.jpg

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