Department of Pharmacy, The Second Affiliated Hospital, Hengyang Medical School, University of South China, Hengyang, Hunan Province 421001, China.
Department of Cardiology, The First Affiliated Hospital, Hengyang Medical School, University of South China, Hengyang, Hunan Province 421001, China.
Biomed Pharmacother. 2024 Apr;173:116305. doi: 10.1016/j.biopha.2024.116305. Epub 2024 Feb 29.
Through bioinformatics analysis, this study explores the interactions and biological pathways involving metabolomic products in patients diagnosed with coronary heart disease (CHD).
A comprehensive search for relevant studies focusing on metabolomics analysis in CHD patients was conducted across databases including CNKI, Wanfang, VIP, CBM, PubMed, Cochrane Library, Nature, Web of Science, Springer, and Science Direct. Metabolites reported in the literature underwent statistical analysis and summarization, with the identification of differential metabolites. The pathways associated with these metabolites were examined using the Kyoto Encyclopedia of Genes and Genomes (KEGG). Molecular annotation of metabolites and their relationships with enzymes or transporters were elucidated through analysis with the Human Metabolome Database (HMDB). Visual representation of the properties related to these metabolites was achieved using Metabolomics Pathway Analysis (metPA).
A total of 13 literatures satisfying the criteria for enrollment were included. A total of 91 metabolites related to CHD were preliminarily screened, and 87 effective metabolites were obtained after the unrecognized metabolites were excluded. A total of 45 pathways were involved. Through the topology analysis (TPA) of pathways, their influence values were calculated, and 13 major metabolic pathways were selected. The pathways such as Phenylalanine, tyrosine, and tryptophan biosynthesis, Citrate cycle (TCA cycle), Glyoxylate and dicarboxylate metabolism, and Glycine, serine, and threonine metabolism primarily involved the regulation of processes and metabolites related to inflammation, oxidative stress, one-carbon metabolism, energy metabolism, lipid metabolism, immune regulation, and nitric oxide expression.
Multiple pathways, including Phenylalanine, tyrosine, and tryptophan biosynthesis, Citrate cycle (TCA cycle), Glyoxylate and dicarboxylate metabolism, and Glycine, serine, and threonine metabolism, were involved in the occurrence of CHD. The occurrence of CHD is primarily associated with the regulation of processes and metabolites related to inflammation, oxidative stress, one-carbon metabolism, energy metabolism, lipid metabolism, immune regulation, and nitric oxide expression.
通过生物信息学分析,本研究探讨了诊断为冠心病(CHD)患者代谢组学产物涉及的相互作用和生物学途径。
通过对中国知网、万方、维普、中国生物医学文献数据库、PubMed、Cochrane 图书馆、Nature、Web of Science、Springer、Science Direct 等数据库中有关 CHD 患者代谢组学分析的相关研究进行全面检索。对文献中报道的代谢物进行统计分析和总结,鉴定差异代谢物。利用京都基因与基因组百科全书(KEGG)分析与这些代谢物相关的途径。通过分析人类代谢组数据库(HMDB),阐明代谢物及其与酶或转运蛋白的关系。利用代谢组学途径分析(metPA)可视化显示这些代谢物的相关特性。
共纳入符合纳入标准的文献 13 篇。初步筛选出与 CHD 相关的代谢物 91 种,排除未识别代谢物后获得有效代谢物 87 种。共涉及 45 条途径。通过途径拓扑分析(TPA)计算其影响值,选取 13 条主要代谢途径。苯丙氨酸、酪氨酸和色氨酸生物合成、柠檬酸循环(TCA 循环)、乙醛酸和二羧酸代谢、甘氨酸、丝氨酸和苏氨酸代谢等途径主要参与炎症、氧化应激、一碳代谢、能量代谢、脂质代谢、免疫调节和一氧化氮表达相关的过程和代谢物的调节。
苯丙氨酸、酪氨酸和色氨酸生物合成、柠檬酸循环(TCA 循环)、乙醛酸和二羧酸代谢、甘氨酸、丝氨酸和苏氨酸代谢等多种途径参与 CHD 的发生。CHD 的发生主要与炎症、氧化应激、一碳代谢、能量代谢、脂质代谢、免疫调节和一氧化氮表达相关的过程和代谢物的调节有关。