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重编程过渡态以提高L-氨基酸氧化酶的C-N裂解效率

Reprogramming the Transition States to Enhance C-N Cleavage Efficiency of l-Amino Acid Oxidase.

作者信息

Wu Yaoyun, Cui Yaozhong, Song Wei, Wei Wanqing, He Zhizhen, Tao Jinyang, Yin Dejing, Chen Xiulai, Gao Cong, Liu Jia, Liu Liming, Wu Jing

机构信息

School of Life Sciences and Health Engineering, Jiangnan University, Wuxi 214122, China.

State Key Laboratory of Food Science and Resources, Jiangnan University, Wuxi 214122, China.

出版信息

JACS Au. 2024 Jan 16;4(2):557-569. doi: 10.1021/jacsau.3c00672. eCollection 2024 Feb 26.

Abstract

lAmino acid oxidase (LAAO) is an important biocatalyst used for synthesizing α-keto acids. LAAO from (LAAO) has a broad substrate spectrum; however, its low total turnover number limits its industrial use. To overcome this, we aimed to employ crystal structure-guided density functional theory calculations and molecular dynamic simulations to investigate the catalytic mechanism. Two key steps were identified: → [] in step 1 and → [] in step 2. We reprogrammed the transition states [] and [] to reduce the identified energy barrier and obtain a LAAO variant capable of catalyzing 19 kinds of l-amino acids to the corresponding high-value α-keto acids with a high total turnover number, yield (≥95.1 g/L), conversion rate (≥95%), and space-time yields ≥142.7 g/L/d in 12-24 h, in a 5 L reactor. Our results indicated the promising potential of the developed LAAO variant for use in the industrial production of α-keto acids while providing a potential catalytic-mechanism-guided protein design strategy to achieve the desired physical and catalytic properties of enzymes.

摘要

L-氨基酸氧化酶(LAAO)是一种用于合成α-酮酸的重要生物催化剂。来自[具体来源未给出]的LAAO具有广泛的底物谱;然而,其较低的总周转数限制了其工业应用。为克服这一问题,我们旨在采用晶体结构引导的密度泛函理论计算和分子动力学模拟来研究催化机制。确定了两个关键步骤:步骤1中[具体反应物1]→[具体产物1],步骤2中[具体反应物2]→[具体产物2]。我们对过渡态[具体过渡态1]和[具体过渡态2]进行重新编程,以降低所确定的能垒,并获得一种LAAO变体,该变体能够在5升反应器中于12至24小时内将19种L-氨基酸催化转化为相应的高价值α-酮酸,具有高总周转数、产率(≥95.1克/升)、转化率(≥95%)和时空产率≥142.7克/升/天。我们的结果表明,所开发的LAAO变体在α-酮酸工业生产中具有广阔的应用潜力,同时提供了一种潜在的催化机制引导的蛋白质设计策略,以实现酶所需的物理和催化特性。

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