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基因组进化塑造前列腺癌疾病类型。

Genomic evolution shapes prostate cancer disease type.

机构信息

Nuffield Department of Surgical Sciences, University of Oxford, Oxford, UK; Nuffield Department of Medicine, University of Oxford, Oxford, UK; Big Data Institute, University of Oxford, Oxford, UK.

Nuffield Department of Medicine, University of Oxford, Oxford, UK; Big Data Institute, University of Oxford, Oxford, UK.

出版信息

Cell Genom. 2024 Mar 13;4(3):100511. doi: 10.1016/j.xgen.2024.100511. Epub 2024 Feb 29.

DOI:10.1016/j.xgen.2024.100511
PMID:38428419
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10943594/
Abstract

The development of cancer is an evolutionary process involving the sequential acquisition of genetic alterations that disrupt normal biological processes, enabling tumor cells to rapidly proliferate and eventually invade and metastasize to other tissues. We investigated the genomic evolution of prostate cancer through the application of three separate classification methods, each designed to investigate a different aspect of tumor evolution. Integrating the results revealed the existence of two distinct types of prostate cancer that arise from divergent evolutionary trajectories, designated as the Canonical and Alternative evolutionary disease types. We therefore propose the evotype model for prostate cancer evolution wherein Alternative-evotype tumors diverge from those of the Canonical-evotype through the stochastic accumulation of genetic alterations associated with disruptions to androgen receptor DNA binding. Our model unifies many previous molecular observations, providing a powerful new framework to investigate prostate cancer disease progression.

摘要

癌症的发展是一个涉及遗传改变的序贯获得的进化过程,这些改变破坏了正常的生物学过程,使肿瘤细胞能够快速增殖,并最终侵袭和转移到其他组织。我们通过应用三种不同的分类方法研究了前列腺癌的基因组进化,每种方法都旨在研究肿瘤进化的不同方面。整合结果揭示了两种不同类型的前列腺癌的存在,它们来自不同的进化轨迹,分别命名为经典和替代进化疾病类型。因此,我们提出了前列腺癌进化的 evotype 模型,其中替代-evotype 肿瘤通过与雄激素受体 DNA 结合破坏相关的遗传改变的随机积累而与经典-evotype 肿瘤分化。我们的模型统一了许多以前的分子观察结果,为研究前列腺癌疾病进展提供了一个强大的新框架。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce6c/10943594/7ab05ff3e84c/fx2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce6c/10943594/2dbc711d57de/fx1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce6c/10943594/14ae5c095f6f/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce6c/10943594/dc98c4781afa/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce6c/10943594/394a2917861a/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce6c/10943594/a29986f427dc/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce6c/10943594/489f0c13e717/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce6c/10943594/7321f41ccc2f/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce6c/10943594/7ab05ff3e84c/fx2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce6c/10943594/2dbc711d57de/fx1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce6c/10943594/14ae5c095f6f/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce6c/10943594/dc98c4781afa/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce6c/10943594/394a2917861a/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce6c/10943594/a29986f427dc/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce6c/10943594/489f0c13e717/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce6c/10943594/7321f41ccc2f/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce6c/10943594/7ab05ff3e84c/fx2.jpg

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引用本文的文献

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Spatial Genomics Identifies Heat Shock Proteins as Key Molecular Changes Associated to Adipose Periprostatic Space Invasion in Prostate Cancer.空间基因组学将热休克蛋白鉴定为与前列腺癌脂肪前列腺周围间隙浸润相关的关键分子变化。

本文引用的文献

1
Whole-genome analysis of Nigerian patients with breast cancer reveals ethnic-driven somatic evolution and distinct genomic subtypes.对尼日利亚乳腺癌患者的全基因组分析揭示了种族驱动的体细胞进化和不同的基因组亚型。
Nat Commun. 2021 Nov 26;12(1):6946. doi: 10.1038/s41467-021-27079-w.
2
The evolutionary history of 2,658 cancers.2658 种癌症的进化史。
Nature. 2020 Feb;578(7793):122-128. doi: 10.1038/s41586-019-1907-7. Epub 2020 Feb 6.
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CHD1 Loss Alters AR Binding at Lineage-Specific Enhancers and Modulates Distinct Transcriptional Programs to Drive Prostate Tumorigenesis.
Cancers (Basel). 2024 Dec 24;17(1):2. doi: 10.3390/cancers17010002.
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Unsupervised self-organising map classification of Raman spectra from prostate cell lines uncovers substratified prostate cancer disease states.对前列腺癌细胞系拉曼光谱进行无监督自组织映射分类,揭示了前列腺癌疾病的分层状态。
Sci Rep. 2025 Jan 4;15(1):773. doi: 10.1038/s41598-024-83708-6.
CHD1缺失改变了谱系特异性增强子处的雄激素受体结合,并调节不同的转录程序以驱动前列腺肿瘤发生。
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Molecular Evolution of Early-Onset Prostate Cancer Identifies Molecular Risk Markers and Clinical Trajectories.早期前列腺癌的分子进化确定了分子风险标志物和临床轨迹。
Cancer Cell. 2018 Dec 10;34(6):996-1011.e8. doi: 10.1016/j.ccell.2018.10.016.
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SPOP-Mutated/CHD1-Deleted Lethal Prostate Cancer and Abiraterone Sensitivity.SPOP 突变/CHD1 缺失致致命性前列腺癌和阿比特龙敏感性。
Clin Cancer Res. 2018 Nov 15;24(22):5585-5593. doi: 10.1158/1078-0432.CCR-18-0937. Epub 2018 Aug 1.
6
The Evolutionary Landscape of Localized Prostate Cancers Drives Clinical Aggression.局部前列腺癌的进化景观驱动临床侵袭性。
Cell. 2018 May 3;173(4):1003-1013.e15. doi: 10.1016/j.cell.2018.03.029. Epub 2018 Apr 19.
7
Sequencing of prostate cancers identifies new cancer genes, routes of progression and drug targets.对前列腺癌的测序鉴定出了新的癌症基因、进展途径和药物靶点。
Nat Genet. 2018 May;50(5):682-692. doi: 10.1038/s41588-018-0086-z. Epub 2018 Apr 16.
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Telomerecat: A ploidy-agnostic method for estimating telomere length from whole genome sequencing data.端粒酶:一种从全基因组测序数据中估计端粒长度的非整倍体方法。
Sci Rep. 2018 Jan 22;8(1):1300. doi: 10.1038/s41598-017-14403-y.
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Whole-genome and Transcriptome Sequencing of Prostate Cancer Identify New Genetic Alterations Driving Disease Progression.前列腺癌的全基因组和转录组测序鉴定出驱动疾病进展的新基因改变。
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DESNT: A Poor Prognosis Category of Human Prostate Cancer.DESNT:人类前列腺癌的预后不良类别。
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