• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

通过酶可及性研究揭示的核糖体结合信使核糖核酸的结构

Structure of ribosome-bound messenger RNA as revealed by enzymatic accessibility studies.

作者信息

Kang C W, Cantor C R

出版信息

J Mol Biol. 1985 Jan 20;181(2):241-51. doi: 10.1016/0022-2836(85)90088-9.

DOI:10.1016/0022-2836(85)90088-9
PMID:3845122
Abstract

Digestion with ribonuclease T2 has been used to study the size of poly(U) protected by ribosome binding. Several different preparations of ribosomes all appear to cover 49 nucleotides of message; however, there are two partially accessible internal nuclease cleavage sites, which yield, ultimately, fragments 20, 16 and 13 nucleotides in length. Curiously, the site between fragments of length 20 and 16 is accessible to RNase T2 but not to the several much smaller RNases. Arguments based on the quantitative pattern of cleavage and comparisons with previous studies lead to the conclusion that the 20-mer is the 5' fragment, while 13-mer (which is lost the moment it is cleaved from the 16-mer) is the 3' fragment. Both ribosome-bound tRNAs appear to contact only the 16-mer. The presence of the two internal cleavage sites fits nicely with recent electron microscopic data suggesting that mRNA forms a loop around the 30 S subunit.

摘要

用核糖核酸酶T2消化已被用于研究核糖体结合所保护的聚尿苷酸(poly(U))的大小。几种不同的核糖体制剂似乎都覆盖了49个核苷酸的信使核糖核酸(mRNA);然而,有两个部分可及的内部核酸酶切割位点,最终产生长度为20、16和13个核苷酸的片段。奇怪的是,长度为20和16的片段之间的位点可被核糖核酸酶T2作用,但不能被几种小得多的核糖核酸酶作用。基于切割的定量模式以及与先前研究的比较得出的结论是,20聚体是5'片段,而13聚体(从16聚体切割下来后立即消失)是3'片段。两个与核糖体结合的转运核糖核酸(tRNA)似乎都只与16聚体接触。这两个内部切割位点的存在与最近的电子显微镜数据非常吻合,这些数据表明mRNA在30 S亚基周围形成一个环。

相似文献

1
Structure of ribosome-bound messenger RNA as revealed by enzymatic accessibility studies.通过酶可及性研究揭示的核糖体结合信使核糖核酸的结构
J Mol Biol. 1985 Jan 20;181(2):241-51. doi: 10.1016/0022-2836(85)90088-9.
2
Localization of 5' and 3' ends of the ribosome-bound segment of template polynucleotides by immune electron microscopy.
EMBO J. 1983;2(5):799-804. doi: 10.1002/j.1460-2075.1983.tb01503.x.
3
Evidence that proteins S1, S11 and S21 directly participates in the binding of transfer RNA to the 30S ribosome.有证据表明蛋白质S1、S11和S21直接参与转运RNA与30S核糖体的结合。
Nucleic Acids Res. 1978 Mar;5(3):933-50. doi: 10.1093/nar/5.3.933.
4
[Availability of DNP-modified 5'- and 3'-ends of the poly(U) fragment bound to the 30S ribosomal subunit for interaction with antibodies].
Biokhimiia. 1984 Jul;49(7):1059-65.
5
Transfer RNA binding to 80S ribosomes from yeast: evidence for three sites.转运RNA与酵母80S核糖体的结合:三个位点的证据。
Biochem Mol Biol Int. 1994 Aug;33(5):909-15.
6
Quantitative study of the interaction of formylmethionyl-tRNAfMet with ribosomes of Escherichia coli.
Eur J Biochem. 1980 May;106(2):449-56. doi: 10.1111/j.1432-1033.1980.tb04591.x.
7
tRNA binding sites of ribosomes from Escherichia coli.大肠杆菌核糖体的tRNA结合位点
Biochemistry. 1984 Dec 18;23(26):6710-7. doi: 10.1021/bi00321a066.
8
Interaction of N-acetyl-phenylalanyl-tRNAPhe with 70S ribosomes of Escherichia coli.N-乙酰苯丙氨酰-tRNA苯丙氨酸与大肠杆菌70S核糖体的相互作用。
Nucleic Acids Res. 1978 Oct;5(10):3871-9. doi: 10.1093/nar/5.10.3871.
9
On the role of protein S4 N-terminal residues 1 through 30 in 30S ribosome function.关于蛋白质S4 N端1至30位残基在30S核糖体功能中的作用
Nucleic Acids Res. 1978 Aug;5(8):2789-99. doi: 10.1093/nar/5.8.2789.
10
Characterization of ribosome-protected fragments from reovirus messenger RNA.呼肠孤病毒信使核糖核酸核糖体保护片段的特性分析
J Biol Chem. 1976 Jul 25;251(14):4259-66.

引用本文的文献

1
Post-transcriptional control of gene expression: bacterial mRNA degradation.转录后基因表达调控:细菌 mRNA 降解。
World J Microbiol Biotechnol. 1993 Jul;9(4):421-32. doi: 10.1007/BF00328030.
2
Multiscale modeling of metabolism and macromolecular synthesis in E. coli and its application to the evolution of codon usage.大肠杆菌中代谢和大分子合成的多尺度建模及其在密码子使用进化中的应用。
PLoS One. 2012;7(9):e45635. doi: 10.1371/journal.pone.0045635. Epub 2012 Sep 28.
3
Regulation of pyrimidine biosynthetic gene expression in bacteria: repression without repressors.
细菌中嘧啶生物合成基因表达的调控:无阻遏物的阻遏作用
Microbiol Mol Biol Rev. 2008 Jun;72(2):266-300, table of contents. doi: 10.1128/MMBR.00001-08.
4
A codon window in mRNA downstream of the initiation codon where NGG codons give strongly reduced gene expression in Escherichia coli.起始密码子下游mRNA中的一个密码子窗口,其中NGG密码子在大肠杆菌中会使基因表达大幅降低。
Nucleic Acids Res. 2004 Sep 30;32(17):5198-205. doi: 10.1093/nar/gkh857. Print 2004.
5
Comparative mutational analysis of cis-acting RNA signals for translational frameshifting in HIV-1 and HTLV-2.HIV-1和HTLV-2中用于翻译移码的顺式作用RNA信号的比较突变分析。
Nucleic Acids Res. 2001 Mar 1;29(5):1125-31. doi: 10.1093/nar/29.5.1125.
6
Decay of ermC mRNA in a polynucleotide phosphorylase mutant of Bacillus subtilis.枯草芽孢杆菌多核苷酸磷酸化酶突变体中ermC信使核糖核酸的衰变
J Bacteriol. 1998 Nov;180(22):5968-77. doi: 10.1128/JB.180.22.5968-5977.1998.
7
The downstream box: an efficient and independent translation initiation signal in Escherichia coli.下游框:大肠杆菌中一种高效且独立的翻译起始信号
EMBO J. 1996 Feb 1;15(3):665-74.
8
Footprinting mRNA-ribosome complexes with chemical probes.用化学探针绘制mRNA-核糖体复合物的足迹图谱。
EMBO J. 1994 Aug 15;13(16):3892-901. doi: 10.1002/j.1460-2075.1994.tb06700.x.
9
Covalent cross-linking of poly(A) to Escherichia coli ribosomes, and localization of the cross-link site within the 16S RNA.聚腺苷酸与大肠杆菌核糖体的共价交联,以及交联位点在16S RNA中的定位。
Nucleic Acids Res. 1988 Mar 25;16(6):2369-88. doi: 10.1093/nar/16.6.2369.
10
Site-directed cross-linking of mRNA analogues to the Escherichia coli ribosome; identification of 30S ribosomal components that can be cross-linked to the mRNA at various points 5' with respect to the decoding site.将mRNA类似物定点交联至大肠杆菌核糖体;鉴定相对于解码位点在5'端不同位置可与mRNA交联的30S核糖体组分。
Nucleic Acids Res. 1989 Dec 11;17(23):9889-908. doi: 10.1093/nar/17.23.9889.