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通过从黄石温泉中培养 Ca. Methanoglobus hypatiae,揭示了古球古菌中的甲基营养型产甲烷作用。

Methylotrophic methanogenesis in the Archaeoglobi revealed by cultivation of Ca. Methanoglobus hypatiae from a Yellowstone hot spring.

机构信息

Department of Chemistry and Biochemistry, Center for Biofilm Engineering, Thermal Biology Institute, Montana State University, Bozeman, MT 59717, United States.

Department of Microbiology and Cell Biology, Montana State University, Bozeman, MT 59717, United States.

出版信息

ISME J. 2024 Jan 8;18(1). doi: 10.1093/ismejo/wrae026.

Abstract

Over the past decade, environmental metagenomics and polymerase chain reaction-based marker gene surveys have revealed that several lineages beyond just a few well-established groups within the Euryarchaeota superphylum harbor the genetic potential for methanogenesis. One of these groups are the Archaeoglobi, a class of thermophilic Euryarchaeota that have long been considered to live non-methanogenic lifestyles. Here, we enriched Candidatus Methanoglobus hypatiae, a methanogen affiliated with the family Archaeoglobaceae, from a hot spring in Yellowstone National Park. The enrichment is sediment-free, grows at 64-70°C and a pH of 7.8, and produces methane from mono-, di-, and tri-methylamine. Ca. M. hypatiae is represented by a 1.62 Mb metagenome-assembled genome with an estimated completeness of 100% and accounts for up to 67% of cells in the culture according to fluorescence in situ hybridization. Via genome-resolved metatranscriptomics and stable isotope tracing, we demonstrate that Ca. M. hypatiae expresses methylotrophic methanogenesis and energy-conserving pathways for reducing monomethylamine to methane. The detection of Archaeoglobi populations related to Ca. M. hypatiae in 36 geochemically diverse geothermal sites within Yellowstone National Park, as revealed through the examination of previously published gene amplicon datasets, implies a previously underestimated contribution to anaerobic carbon cycling in extreme ecosystems.

摘要

在过去的十年中,环境宏基因组学和基于聚合酶链反应的标记基因调查揭示了除了古菌超门中的少数几个已确立的群体之外,还有几个谱系具有产甲烷的遗传潜力。其中一组是古球古菌,这是一类嗜热古菌,长期以来被认为是非产甲烷的生活方式。在这里,我们从黄石国家公园的一处温泉中富集了与古菌科有关的产甲烷菌候选种 Methanoglobus hypatiae。该富集物是无沉积物的,在 64-70°C 和 pH 值为 7.8 的条件下生长,并从单甲基胺、二甲基胺和三甲基胺中产生甲烷。Ca. M. hypatiae 由一个 1.62 Mb 的宏基因组组装基因组代表,估计完整性为 100%,根据荧光原位杂交,根据荧光原位杂交,在培养物中占细胞的比例高达 67%。通过基因组解析的宏转录组学和稳定同位素示踪,我们证明 Ca. M. hypatiae 表达了甲基营养型产甲烷作用和能量守恒途径,将单甲基胺还原为甲烷。通过检查以前发表的基因扩增子数据集,在黄石国家公园内 36 个地球化学多样的地热点中检测到与 Ca. M. hypatiae 相关的古球古菌种群,这意味着在极端生态系统中对厌氧碳循环的贡献被低估了。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c1d0/10945360/5ee507567217/wrae026f1.jpg

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