Liu Yi-Fan, Chen Jing, Zaramela Livia S, Wang Li-Ying, Mbadinga Serge Maurice, Hou Zhao-Wei, Wu Xiao-Lin, Gu Ji-Dong, Zengler Karsten, Mu Bo-Zhong
State Key Laboratory of Bioreactor Engineering and School of Chemistry and Molecular Engineering, East China University of Science and Technology, Shanghai, People's Republic of China.
Engineering Research Center of MEOR, East China University of Science and Technology, Shanghai, People's Republic of China.
mSystems. 2020 Mar 17;5(2):e00651-19. doi: 10.1128/mSystems.00651-19.
Euryarchaeal lineages have been believed to have a methanogenic last common ancestor. However, members of euryarchaeal have long been considered nonmethanogenic and their evolutionary history remains elusive. Here, three high-quality metagenomic-assembled genomes (MAGs) retrieved from high-temperature oil reservoir and hot springs, together with three newly assembled MAGs from previously reported hot spring metagenomes, are demonstrated to represent a novel genus of , " Methanomixophus." All " Methanomixophus" MAGs encode an M methyltransferase (MTR) complex and a traditional type of methyl-coenzyme M reductase (MCR) complex, which is different from the divergent MCR complexes found in " Polytropus marinifundus." In addition, " Methanomixophus dualitatem" MAGs preserve the genomic capacity for dissimilatory sulfate reduction. Comparative phylogenetic analysis supports a laterally transferred origin for an MCR complex and vertical heritage of the MTR complex in this lineage. Metatranscriptomic analysis revealed concomitant activity of hydrogen-dependent methylotrophic methanogenesis and heterotrophic fermentation within populations of " Methanomixophus hydrogenotrophicum" in a high-temperature oil reservoir. Current understanding of the diversity, biology, and ecology of is very limited, especially considering how few of the known phyla have been cultured or genomically explored. The reconstruction of " Methanomixophus" MAGs not only expands the known range of metabolic versatility of the members of but also suggests that the phylogenetic distribution of MCR and MTR complexes is even wider than previously anticipated.
广古菌谱系被认为有一个产甲烷的最后共同祖先。然而,广古菌成员长期以来被认为是非产甲烷菌,它们的进化历史仍然难以捉摸。在这里,从高温油藏和温泉中获得的三个高质量宏基因组组装基因组(MAGs),连同从先前报道的温泉宏基因组中新组装的三个MAGs,被证明代表了一个新的属,即“混合甲烷菌属”。所有“混合甲烷菌属”的MAGs都编码一个M甲基转移酶(MTR)复合物和一种传统类型的甲基辅酶M还原酶(MCR)复合物,这与在“海底多枝菌”中发现的不同的MCR复合物不同。此外,“双质混合甲烷菌”的MAGs保留了异化硫酸盐还原的基因组能力。比较系统发育分析支持该谱系中MCR复合物的横向转移起源和MTR复合物的垂直遗传。宏转录组分析揭示了高温油藏中“嗜氢混合甲烷菌”群体内依赖氢的甲基营养型产甲烷作用和异养发酵的伴随活性。目前对广古菌的多样性、生物学和生态学的了解非常有限,特别是考虑到已知的门类中只有很少被培养或进行基因组探索。“混合甲烷菌属”MAGs的重建不仅扩大了广古菌成员已知的代谢多功能范围,还表明MCR和MTR复合物的系统发育分布比以前预期的更广泛。