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多核铁加氧酶催化的来自不同甲烷菌素样 RiPP 基因簇的 N-Cα 键断裂。

N-Cα Bond Cleavage Catalyzed by a Multinuclear Iron Oxygenase from a Divergent Methanobactin-like RiPP Gene Cluster.

机构信息

Department of Chemistry, Princeton University, Princeton, New Jersey 08544, United States.

Department of Molecular Biology, Princeton University, Princeton, New Jersey 08544, United States.

出版信息

J Am Chem Soc. 2024 Mar 20;146(11):7313-7323. doi: 10.1021/jacs.3c11740. Epub 2024 Mar 7.

Abstract

DUF692 multinuclear iron oxygenases (MNIOs) are an emerging family of tailoring enzymes involved in the biosynthesis of ribosomally synthesized and post-translationally modified peptides (RiPPs). Three members, MbnB, TglH, and ChrH, have been characterized to date and shown to catalyze unusual and complex transformations. Using a co-occurrence-based bioinformatic search strategy, we recently generated a sequence similarity network of MNIO-RiPP operons that encode one or more MNIOs adjacent to a transporter. The network revealed >1000 unique gene clusters, evidence of an unexplored biosynthetic landscape. Herein, we assess an MNIO-RiPP cluster from this network that is encoded in Proteobacteria and Actinobacteria. The cluster, which we have termed (for methanobactin-like operon in ), encodes a 23-residue precursor peptide, two MNIOs, a RiPP recognition element, and a transporter. Using both in vivo and in vitro methods, we show that one MNIO, homologous to MbnB, installs an oxazolone-thioamide at a Thr-Cys dyad in the precursor. Subsequently, the second MNIO catalyzes N-Cα bond cleavage of the penultimate Asn to generate a -terminally amidated peptide. This transformation expands the reaction scope of the enzyme family, marks the first example of an MNIO-catalyzed modification that does not involve Cys, and sets the stage for future exploration of other MNIO-RiPPs.

摘要

DUF692 多金属氧酶(MNIOs)是一个新兴的修饰酶家族,参与核糖体合成和翻译后修饰肽(RiPPs)的生物合成。迄今为止,已经有三个成员(MbnB、TglH 和 ChrH)得到了表征,并显示出催化不寻常和复杂的转化。我们最近使用基于共现的生物信息学搜索策略,生成了一个 MNIO-RiPP 操纵子的序列相似性网络,该网络编码一个或多个 MNIOs 紧邻一个转运蛋白。该网络揭示了 >1000 个独特的基因簇,这表明存在一个未被探索的生物合成景观。在此,我们评估了来自该网络的一个 MNIO-RiPP 簇,该簇编码于变形菌门和放线菌门中。该簇,我们称之为 (来自 中的甲烷菌素样操纵子),编码一个 23 个残基的前体肽、两个 MNIOs、一个 RiPP 识别元件和一个转运蛋白。我们使用体内和体外方法表明,一个与 MbnB 同源的 MNIO 在前体中的 Thr-Cys 二联体上安装一个噁唑酮-硫酰胺。随后,第二个 MNIO 催化倒数第二个 Asn 的 N-Cα 键断裂,生成一个 -末端酰胺化的肽。这种转化扩展了酶家族的反应范围,标志着第一个 MNIO 催化的修饰不涉及半胱氨酸的例子,并为进一步探索其他 MNIO-RiPPs 奠定了基础。

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