• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

用于新酶化学的基因组挖掘

Genome Mining for New Enzyme Chemistry.

作者信息

Nguyen Dinh T, Mitchell Douglas A, van der Donk Wilfred A

机构信息

Department of Chemistry, Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States.

Howard Hughes Medical Institute at the University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States.

出版信息

ACS Catal. 2024 Mar 12;14(7):4536-4553. doi: 10.1021/acscatal.3c06322. eCollection 2024 Apr 5.

DOI:10.1021/acscatal.3c06322
PMID:38601780
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11002830/
Abstract

A revolution in the field of biocatalysis has enabled scalable access to compounds of high societal values using enzymes. The construction of biocatalytic routes relies on the reservoir of available enzymatic transformations. A review of uncharacterized proteins predicted from genomic sequencing projects shows that a treasure trove of enzyme chemistry awaits to be uncovered. This Review highlights enzymatic transformations discovered through various genome mining methods and showcases their potential future applications in biocatalysis.

摘要

生物催化领域的一场革命使得利用酶能够规模化地获取具有高度社会价值的化合物。生物催化路线的构建依赖于可用酶促转化反应的储备。对从基因组测序项目中预测出的未表征蛋白质的综述表明,酶化学的宝库有待发掘。本综述重点介绍了通过各种基因组挖掘方法发现的酶促转化反应,并展示了它们在生物催化中潜在的未来应用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6968/11002830/a1e2d4831574/cs3c06322_0008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6968/11002830/9270244f364f/cs3c06322_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6968/11002830/ddfa20b556db/cs3c06322_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6968/11002830/fd8c54280a24/cs3c06322_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6968/11002830/75c3e246c16a/cs3c06322_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6968/11002830/07f8075db2af/cs3c06322_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6968/11002830/dade2a1f44f3/cs3c06322_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6968/11002830/fec7db6d0405/cs3c06322_0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6968/11002830/a1e2d4831574/cs3c06322_0008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6968/11002830/9270244f364f/cs3c06322_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6968/11002830/ddfa20b556db/cs3c06322_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6968/11002830/fd8c54280a24/cs3c06322_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6968/11002830/75c3e246c16a/cs3c06322_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6968/11002830/07f8075db2af/cs3c06322_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6968/11002830/dade2a1f44f3/cs3c06322_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6968/11002830/fec7db6d0405/cs3c06322_0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6968/11002830/a1e2d4831574/cs3c06322_0008.jpg

相似文献

1
Genome Mining for New Enzyme Chemistry.用于新酶化学的基因组挖掘
ACS Catal. 2024 Mar 12;14(7):4536-4553. doi: 10.1021/acscatal.3c06322. eCollection 2024 Apr 5.
2
Recent Developments and Applications of Biocatalytic and Chemoenzymatic Synthesis for the Generation of Diverse Classes of Drugs.生物催化和化学酶法合成在生成各类药物方面的最新进展和应用。
Curr Pharm Biotechnol. 2024;25(4):448-467. doi: 10.2174/0113892010238984231019085154.
3
Reinvigorating the Chiral Pool: Chemoenzymatic Approaches to Complex Peptides and Terpenoids.重振手性库:复杂肽和萜类的酶促方法。
Acc Chem Res. 2021 Mar 2;54(5):1143-1156. doi: 10.1021/acs.accounts.0c00823. Epub 2021 Feb 5.
4
Enzyme-Laden Bioactive Hydrogel for Biocatalytic Monitoring and Regulation.酶负载生物活性水凝胶用于生物催化监测和调控。
Acc Chem Res. 2021 Mar 2;54(5):1274-1287. doi: 10.1021/acs.accounts.0c00832. Epub 2021 Feb 11.
5
Photo-biocatalytic Cascades: Combining Chemical and Enzymatic Transformations Fueled by Light.光驱动的化学-酶级联反应:结合了光驱动的化学转化和酶促转化。
Chembiochem. 2021 Mar 2;22(5):790-806. doi: 10.1002/cbic.202000587. Epub 2020 Nov 6.
6
Endophytic Fungi-Mediated Biocatalysis and Biotransformations Paving the Way Toward Green Chemistry.内生真菌介导的生物催化与生物转化为绿色化学铺平道路。
Front Bioeng Biotechnol. 2021 Jun 16;9:664705. doi: 10.3389/fbioe.2021.664705. eCollection 2021.
7
Chemo-enzymatic synthesis of natural products and their analogs.天然产物及其类似物的化学-酶合成。
Curr Opin Biotechnol. 2022 Oct;77:102759. doi: 10.1016/j.copbio.2022.102759. Epub 2022 Jul 28.
8
Flow Biocatalysis: A Challenging Alternative for the Synthesis of APIs and Natural Compounds.流态生物催化:一种用于 API 和天然产物合成的极具挑战性的替代方法。
Int J Mol Sci. 2021 Jan 20;22(3):990. doi: 10.3390/ijms22030990.
9
Biocatalytic routes to chiral amines and amino acids.制备手性胺和氨基酸的生物催化途径。
Curr Opin Drug Discov Devel. 2009 Nov;12(6):784-97.
10
Biocatalysis for the asymmetric synthesis of Active Pharmaceutical Ingredients (APIs): this time is for real.生物催化在手性药物合成中的应用:这一次是认真的。
Expert Opin Drug Discov. 2022 Oct;17(10):1159-1171. doi: 10.1080/17460441.2022.2114453. Epub 2022 Aug 31.

引用本文的文献

1
Tech-Enhanced Synthesis: Exploring the Synergy between Organic Chemistry and Technology.技术增强合成:探索有机化学与技术之间的协同作用。
J Am Chem Soc. 2025 Aug 13;147(32):28523-28545. doi: 10.1021/jacs.5c10303. Epub 2025 Aug 5.
2
Discovery of bacterial terpenoids by genome mining.通过基因组挖掘发现细菌萜类化合物。
Methods Enzymol. 2025;717:349-385. doi: 10.1016/bs.mie.2025.01.078. Epub 2025 Mar 12.
3
Biosynthesis of Biphenomycin-like Macrocyclic Peptides by Formation and Cross-Linking of -Tyrosines.通过酪氨酸的形成和交联生物合成联苯霉素样大环肽。

本文引用的文献

1
Biosynthesis of Macrocyclic Peptides with C-Terminal β-Amino-α-keto Acid Groups by Three Different Metalloenzymes.三种不同金属酶催化合成具有C端β-氨基-α-酮酸基团的大环肽
ACS Cent Sci. 2024 Apr 11;10(5):1022-1032. doi: 10.1021/acscentsci.4c00088. eCollection 2024 May 22.
2
N-Cα Bond Cleavage Catalyzed by a Multinuclear Iron Oxygenase from a Divergent Methanobactin-like RiPP Gene Cluster.多核铁加氧酶催化的来自不同甲烷菌素样 RiPP 基因簇的 N-Cα 键断裂。
J Am Chem Soc. 2024 Mar 20;146(11):7313-7323. doi: 10.1021/jacs.3c11740. Epub 2024 Mar 7.
3
A Promiscuous rSAM Enzyme Enables Diverse Peptide Cross-linking.
J Am Chem Soc. 2025 Jul 9;147(27):23781-23796. doi: 10.1021/jacs.5c06044. Epub 2025 Jun 26.
4
Characterization of a novel glycocin from a thermophile.一种嗜热菌新型糖肽菌素的特性分析
bioRxiv. 2025 May 20:2025.05.19.655019. doi: 10.1101/2025.05.19.655019.
5
Discovery of a Two-Step Enzyme Cascade Converting Aspartate to Aminomalonate in Peptide Natural Product Biosynthesis.在肽类天然产物生物合成中发现将天冬氨酸转化为氨基丙二酸的两步酶级联反应。
J Am Chem Soc. 2025 Jun 18;147(24):20909-20918. doi: 10.1021/jacs.5c05071. Epub 2025 Jun 5.
6
Biosynthesis of Macrocyclic Peptides by Formation and Crosslinking of -Tyrosines.通过γ-酪氨酸的形成和交联进行大环肽的生物合成。
bioRxiv. 2025 Apr 8:2025.04.04.647296. doi: 10.1101/2025.04.04.647296.
7
Purification and biochemical characterization of methanobactin biosynthetic enzymes.甲烷菌素生物合成酶的纯化和生化特性分析。
Methods Enzymol. 2024;702:171-187. doi: 10.1016/bs.mie.2024.06.011. Epub 2024 Jul 14.
一种混杂的rSAM酶可实现多种肽交联。
ACS Bio Med Chem Au. 2023 Aug 15;3(6):480-493. doi: 10.1021/acsbiomedchemau.3c00043. eCollection 2023 Dec 20.
4
P450-Modified Multicyclic Cyclophane-Containing Ribosomally Synthesized and Post-Translationally Modified Peptides.P450 修饰的多环芳烃含核糖基合成和翻译后修饰的肽。
Angew Chem Int Ed Engl. 2024 Mar 4;63(10):e202314046. doi: 10.1002/anie.202314046. Epub 2024 Jan 23.
5
P450-Modified Ribosomally Synthesized Peptides with Aromatic Cross-Links.具有芳香交叉键的 P450 修饰的核糖体合成肽。
J Am Chem Soc. 2023 Dec 20;145(50):27325-27335. doi: 10.1021/jacs.3c07416. Epub 2023 Dec 9.
6
Deep Learning-Driven Library Design for the Discovery of Bioactive Thiopeptides.用于发现生物活性硫肽的深度学习驱动的文库设计
ACS Cent Sci. 2023 Nov 7;9(11):2150-2160. doi: 10.1021/acscentsci.3c00957. eCollection 2023 Nov 22.
7
Bioinformatics-guided discovery of biaryl-linked lasso peptides.生物信息学引导下的联芳基连接套索肽的发现
Chem Sci. 2023 Oct 30;14(45):13176-13183. doi: 10.1039/d3sc02380j. eCollection 2023 Nov 22.
8
RefSeq and the prokaryotic genome annotation pipeline in the age of metagenomes.RefSeq 与宏基因组时代的原核生物基因组注释流程。
Nucleic Acids Res. 2024 Jan 5;52(D1):D762-D769. doi: 10.1093/nar/gkad988.
9
Cytochromes P450 Associated with the Biosyntheses of Ribosomally Synthesized and Post-translationally Modified Peptides.与核糖体合成及翻译后修饰肽生物合成相关的细胞色素P450
ACS Bio Med Chem Au. 2023 Jul 13;3(5):371-388. doi: 10.1021/acsbiomedchemau.3c00026. eCollection 2023 Oct 18.
10
Bacterial Cytochrome P450 Catalyzed Post-translational Macrocyclization of Ribosomal Peptides.细菌细胞色素 P450 催化核糖体肽的翻译后大环化。
Angew Chem Int Ed Engl. 2023 Nov 13;62(46):e202311533. doi: 10.1002/anie.202311533. Epub 2023 Oct 13.