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使用长读长对[未提及的内容]和变形翼病毒进行单倍型分析。

Haplotype Analysis of and Deformed Wing Virus Using Long Reads.

作者信息

Bai Wen Feng, Lin Zhe Guang, Yan Wei Yu, Zhang Li Zhen, Evans Jay D, Huang Qiang

机构信息

Honeybee Research Institute, Jiangxi Agricultural University, Nanchang, China.

Jiangxi Province Key Laboratory of Honeybee Biology and Beekeeping, Jiangxi Agricultural University, Nanchang, China.

出版信息

Front Insect Sci. 2021 Dec 3;1:756886. doi: 10.3389/finsc.2021.756886. eCollection 2021.

DOI:10.3389/finsc.2021.756886
PMID:38468896
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10926369/
Abstract

As a phoretic parasite and virus vector, the mite and the associated Deformed wing virus (DWV) form a lethal combination to the honey bee, . Routine acaricide treatment has been reported to reduce the diversity of mites and select for tolerance against these treatments. Further, different DWV strains face selective pressures when transmitted via mites. In this study, the haplotypes of mites and associated DWV variants were quantified using long reads. A single haplotype dominated the mite mitochondrial gene cytochrome oxidase subunit I, reflecting an ancient bottleneck. However, highly polymorphic genes were present across the mite genome, suggesting the diversity of mites could be actively maintained at a regional level. DWV detected in both mites and honey bees show a dominant variant with only a few low-frequency alternate haplotypes. The relative abundances of DWV haplotypes isolated from honey bees and mites were highly consistent, suggesting that some variants are favored by ongoing selection.

摘要

作为一种携播性寄生虫和病毒载体,瓦螨及其相关的残翅病毒(DWV)对蜜蜂构成了致命组合。据报道,常规杀螨剂处理会降低瓦螨的多样性,并促使其产生对这些处理的耐受性。此外,不同的DWV毒株在通过瓦螨传播时面临选择压力。在本研究中,利用长读长对瓦螨的单倍型及其相关的DWV变体进行了定量分析。单一单倍型在瓦螨线粒体基因细胞色素氧化酶亚基I中占主导地位,这反映了一个古老的瓶颈效应。然而,瓦螨基因组中存在高度多态性的基因,这表明瓦螨的多样性可能在区域水平上得到积极维持。在瓦螨和蜜蜂中检测到的DWV均显示出一个占主导地位的变体,只有少数低频替代单倍型。从蜜蜂和瓦螨中分离出的DWV单倍型的相对丰度高度一致,这表明一些变体受到持续选择的青睐。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e850/10926369/9b3f7f0fd70d/finsc-01-756886-g0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e850/10926369/753ed4fd494a/finsc-01-756886-g0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e850/10926369/eed12980fe1d/finsc-01-756886-g0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e850/10926369/9b3f7f0fd70d/finsc-01-756886-g0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e850/10926369/753ed4fd494a/finsc-01-756886-g0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e850/10926369/eed12980fe1d/finsc-01-756886-g0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e850/10926369/9b3f7f0fd70d/finsc-01-756886-g0003.jpg

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本文引用的文献

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Population genetics and host specificity of mites infesting eastern and western honeybees.寄生于东方蜜蜂和西方蜜蜂的螨类的群体遗传学与宿主特异性
J Pest Sci (2004). 2021;94(4):1487-1504. doi: 10.1007/s10340-020-01322-7. Epub 2021 Jan 15.
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Evidence for and against deformed wing virus spillover from honey bees to bumble bees: a reverse genetic analysis.支持和反对变形翅膀病毒从蜜蜂到熊蜂溢出的证据:反向遗传分析。
Sci Rep. 2020 Oct 8;10(1):16847. doi: 10.1038/s41598-020-73809-3.
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Occurrence and Molecular Phylogeny of Honey Bee Viruses in Vespids.
胡蜂科中蜜蜂病毒的发生与分子系统发育
Viruses. 2019 Dec 19;12(1):6. doi: 10.3390/v12010006.
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Improved metagenomic analysis with Kraken 2.Kraken 2 提升宏基因组分析。
Genome Biol. 2019 Nov 28;20(1):257. doi: 10.1186/s13059-019-1891-0.
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Reproduction of Distinct Genotypes on Honey Bee Worker Brood.蜜蜂工蜂幼虫不同基因型的繁殖
Insects. 2019 Oct 25;10(11):372. doi: 10.3390/insects10110372.
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Longshot enables accurate variant calling in diploid genomes from single-molecule long read sequencing.Longshot 可通过单分子长读测序对二倍体基因组进行准确的变异调用。
Nat Commun. 2019 Oct 11;10(1):4660. doi: 10.1038/s41467-019-12493-y.
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Dynamic evolution in the key honey bee pathogen deformed wing virus: Novel insights into virulence and competition using reverse genetics.关键蜜蜂蜜蜂病原体变形翅膀病毒的动态演变:利用反向遗传学研究毒力和竞争的新见解。
PLoS Biol. 2019 Oct 10;17(10):e3000502. doi: 10.1371/journal.pbio.3000502. eCollection 2019 Oct.
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Divergent evolutionary trajectories following speciation in two ectoparasitic honey bee mites.物种形成后两种寄生性蜜蜂螨虫的分歧进化轨迹。
Commun Biol. 2019 Oct 1;2:357. doi: 10.1038/s42003-019-0606-0. eCollection 2019.
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Population genetics of ectoparasitic mites spp. in Eastern and Western honey bees.蜂体寄生螨种的种群遗传学:东方和西方蜜蜂。
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Evolution. 2019 Apr;73(4):636-647. doi: 10.1111/evo.13692. Epub 2019 Feb 14.