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用于研究……中花色形成的qRT-PCR内参基因的筛选与验证

Selection and Validation of qRT-PCR Internal Reference Genes to Study Flower Color Formation in .

作者信息

Zhang Peilan, Chen Shuying, Chen Siyu, Zhu Yuanming, Lin Yuqing, Xu Xinyu, Liu Zhongjian, Zou Shuangquan

机构信息

College of Forestry, Fujian Agriculture and Forestry University, Fuzhou 350002, China.

Fujian Colleges and Universities Engineering Research Institute of Conservation and Utilization of Natural Bioresources, Fujian Agriculture and Forestry University, Fuzhou 350002, China.

出版信息

Int J Mol Sci. 2024 Mar 6;25(5):3029. doi: 10.3390/ijms25053029.

Abstract

Real-time quantitative PCR (qRT-PCR) is a pivotal technique for gene expression analysis. To ensure reliable and accurate results, the internal reference genes must exhibit stable expression across varied experimental conditions. Currently, no internal reference genes for have been established. This study aimed to identify stable internal reference genes from eight candidates derived from different developmental stages of flowers. We employed geNorm, NormFinder, and BestKeeper to evaluate the expression stability of these candidates, which was followed by a comprehensive stability analysis. The results indicated that , a tubulin gene, exhibited the most stable expression among the eight reference gene candidates in the petals. Subsequently, was utilized as an internal reference for the qRT-PCR analysis of six genes implicated in the petal pigment synthesis pathway of . The qRT-PCR results were corroborated by transcriptome sequencing data, affirming the stability and suitability of as a reference gene. This study marks the first identification of stable internal reference genes within the entire genome of , establishing a foundation for future gene expression and functional studies. Identifying such stable reference genes is crucial for advancing molecular research on .

摘要

实时定量PCR(qRT-PCR)是基因表达分析的关键技术。为确保结果可靠且准确,内参基因必须在各种实验条件下均表现出稳定的表达。目前,尚未建立[具体物种名称]的内参基因。本研究旨在从[具体物种名称]花不同发育阶段衍生的八个候选基因中鉴定出稳定的内参基因。我们使用geNorm、NormFinder和BestKeeper评估这些候选基因的表达稳定性,随后进行全面的稳定性分析。结果表明,一个微管蛋白基因[具体基因名称]在花瓣的八个候选参考基因中表现出最稳定的表达。随后,[具体基因名称]被用作[具体物种名称]花瓣色素合成途径中六个基因的qRT-PCR分析的内参。qRT-PCR结果得到转录组测序数据的证实,确认了[具体基因名称]作为参考基因的稳定性和适用性。本研究首次在[具体物种名称]的全基因组中鉴定出稳定的内参基因,为未来的基因表达和功能研究奠定了基础。鉴定此类稳定的参考基因对于推进[具体物种名称]的分子研究至关重要。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e606/10932070/46c81a864839/ijms-25-03029-g001.jpg

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