• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

转录组范围内人参中参与人参皂苷Ro生物合成的一个基因的鉴定与综合分析

Transcriptome-Wide Identification and Integrated Analysis of a Gene Involved in Ginsenoside Ro Biosynthesis in .

作者信息

Yu Xiaochen, Yu Jinghui, Liu Sizhang, Liu Mingming, Wang Kangyu, Zhao Mingzhu, Wang Yanfang, Chen Ping, Lei Jun, Wang Yi, Zhang Meiping

机构信息

College of Life Science, Jilin Agricultural University, Changchun 130118, China.

Jilin Engineering Research Center Ginseng Genetic Resources Development and Utilization, Changchun 130118, China.

出版信息

Plants (Basel). 2024 Feb 23;13(5):604. doi: 10.3390/plants13050604.

DOI:10.3390/plants13050604
PMID:38475452
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10935288/
Abstract

as a traditional medicinal plant with a long history of medicinal use. Ginsenoside Ro is the only oleanane-type ginsenoside in ginseng, and has various pharmacological activities, including anti-inflammatory, detoxification, and antithrombotic activities. UDP-dependent glycosyltransferase (UGT) plays a key role in the synthesis of ginsenoside, and the excavation of UGT genes involved in the biosynthesis of ginsenoside Ro has great significance in enriching ginsenoside genetic resources and further revealing the synthesis mechanism of ginsenoside. In this work, ginsenoside-Ro-synthesis-related genes were mined using the reference-free transcriptome database. Fourteen hub transcripts were identified by differential expression analysis and weighted gene co-expression network analysis. Phylogenetic and synteny block analyses of , a transcript among the hub transcripts, showed that belonged to the subfamily and was relatively conserved in ginseng plants. Functional analysis showed that encodes a glucuronosyltransferase that catalyzes the glucuronide modification of the C3 position of oleanolic acid using uridine diphosphate glucuronide as the substrate. Furthermore, the mutation at 622 bp of its open reading frame resulted in amino acid substitutions that may significantly affect the catalytic activity of the enzyme, and, as a consequence, affect the biosynthesis of ginsenoside Ro. Results of the in vitro enzyme activity assay of the heterologous expression product in of verified the above analyses. The function of was further verified by the result that its overexpression in ginseng adventitious roots significantly increased the content of ginsenoside Ro. The present work identified a new gene involved in the biosynthesis of ginsenoside Ro, which not only enriches the functional genes in the ginsenoside synthesis pathway, but also provides the technical basis and theoretical basis for the in-depth excavation of ginsenoside-synthesis-related genes.

摘要

作为一种有着悠久药用历史的传统药用植物。人参皂苷Ro是人参中唯一的齐墩果烷型人参皂苷,具有多种药理活性,包括抗炎、解毒和抗血栓活性。UDP依赖性糖基转移酶(UGT)在人参皂苷的合成中起关键作用,挖掘参与人参皂苷Ro生物合成的UGT基因对于丰富人参皂苷遗传资源和进一步揭示人参皂苷的合成机制具有重要意义。在这项工作中,利用无参考转录组数据库挖掘与人参皂苷-Ro-合成相关的基因。通过差异表达分析和加权基因共表达网络分析鉴定出14个核心转录本。对核心转录本中的一个转录本进行系统发育和共线性分析,结果表明该转录本属于亚家族,在人参植株中相对保守。功能分析表明,该转录本编码一种葡糖醛酸基转移酶,该酶以尿苷二磷酸葡糖醛酸为底物催化齐墩果酸C3位的葡糖醛酸化修饰。此外,其开放阅读框622 bp处的突变导致氨基酸替换,这可能会显著影响该酶的催化活性,进而影响人参皂苷Ro的生物合成。对该转录本在大肠杆菌中的异源表达产物进行体外酶活性测定的结果验证了上述分析。通过在人参不定根中过表达该转录本显著提高人参皂苷Ro含量的结果进一步验证了其功能。本研究鉴定出一个参与人参皂苷Ro生物合成的新基因,这不仅丰富了人参皂苷合成途径中的功能基因,也为人参皂苷合成相关基因的深入挖掘提供了技术基础和理论依据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/097d/10935288/82ca7b444e54/plants-13-00604-g011a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/097d/10935288/ca463b1ec874/plants-13-00604-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/097d/10935288/77516b5cf19f/plants-13-00604-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/097d/10935288/f9053aff3f65/plants-13-00604-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/097d/10935288/d099acf102db/plants-13-00604-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/097d/10935288/2699ca6113da/plants-13-00604-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/097d/10935288/72e0753457a5/plants-13-00604-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/097d/10935288/819694de4821/plants-13-00604-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/097d/10935288/4f368ab1354c/plants-13-00604-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/097d/10935288/397d8abd8a60/plants-13-00604-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/097d/10935288/651aea6fadcb/plants-13-00604-g010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/097d/10935288/82ca7b444e54/plants-13-00604-g011a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/097d/10935288/ca463b1ec874/plants-13-00604-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/097d/10935288/77516b5cf19f/plants-13-00604-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/097d/10935288/f9053aff3f65/plants-13-00604-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/097d/10935288/d099acf102db/plants-13-00604-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/097d/10935288/2699ca6113da/plants-13-00604-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/097d/10935288/72e0753457a5/plants-13-00604-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/097d/10935288/819694de4821/plants-13-00604-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/097d/10935288/4f368ab1354c/plants-13-00604-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/097d/10935288/397d8abd8a60/plants-13-00604-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/097d/10935288/651aea6fadcb/plants-13-00604-g010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/097d/10935288/82ca7b444e54/plants-13-00604-g011a.jpg

相似文献

1
Transcriptome-Wide Identification and Integrated Analysis of a Gene Involved in Ginsenoside Ro Biosynthesis in .转录组范围内人参中参与人参皂苷Ro生物合成的一个基因的鉴定与综合分析
Plants (Basel). 2024 Feb 23;13(5):604. doi: 10.3390/plants13050604.
2
Biosynthesis of Oleanane-Type Ginsenosides in Using Two Types of Glycosyltransferases from .利用 中的两种糖基转移酶合成齐墩果烷型人参皂苷。
J Agric Food Chem. 2022 Feb 23;70(7):2231-2240. doi: 10.1021/acs.jafc.1c07526. Epub 2022 Feb 11.
3
The involvement of β-amyrin 28-oxidase (CYP716A52v2) in oleanane-type ginsenoside biosynthesis in Panax ginseng.β-香树脂醇 28-氧化酶(CYP716A52v2)在人参中齐墩果烷型人参皂苷生物合成中的作用。
Plant Cell Physiol. 2013 Dec;54(12):2034-46. doi: 10.1093/pcp/pct141. Epub 2013 Oct 3.
4
Identification of two UDP-glycosyltransferases involved in the main oleanane-type ginsenosides in Panax japonicus var. major.鉴定参与日本人参主要齐墩果烷型人参皂苷形成的两个 UDP-糖基转移酶。
Planta. 2021 Apr 5;253(5):91. doi: 10.1007/s00425-021-03617-0.
5
Weighted gene co-expression network analysis and identification of ginsenoside biosynthesis candidate genes for ginseng adventitious roots under MeJA treatment.加权基因共表达网络分析及茉莉酸甲酯处理下人參不定根中人参皂苷生物合成候选基因的鉴定
Genes Genomics. 2024 Dec;46(12):1473-1485. doi: 10.1007/s13258-024-01577-9. Epub 2024 Oct 7.
6
Integrative transcriptome analysis identifies new oxidosqualene cyclase genes involved in ginsenoside biosynthesis in Jilin ginseng.整合转录组分析鉴定出参与吉林人参人参皂苷生物合成的新氧化鲨烯环化酶基因。
Genomics. 2021 Jul;113(4):2304-2316. doi: 10.1016/j.ygeno.2021.05.023. Epub 2021 May 25.
7
Transcriptome analysis of Panax zingiberensis identifies genes encoding oleanolic acid glucuronosyltransferase involved in the biosynthesis of oleanane-type ginsenosides.转录组分析鉴定了参与齐墩果烷型人参皂苷生物合成的熊果酸葡萄糖醛酸基转移酶编码基因
Planta. 2019 Feb;249(2):393-406. doi: 10.1007/s00425-018-2995-6. Epub 2018 Sep 15.
8
[Identification and functional characterization of candidate genes involved in biosynthesis of ginsenoside Rg_1].[人参皂苷Rg_1生物合成相关候选基因的鉴定与功能表征]
Zhongguo Zhong Yao Za Zhi. 2024 Jul;49(13):3473-3483. doi: 10.19540/j.cnki.cjcmm.20240413.101.
9
Functional regulation of ginsenoside biosynthesis by RNA interferences of a UDP-glycosyltransferase gene in Panax ginseng and Panax quinquefolius.通过人参和西洋参中UDP-糖基转移酶基因的RNA干扰对人参皂苷生物合成的功能调控
Plant Physiol Biochem. 2017 Feb;111:67-76. doi: 10.1016/j.plaphy.2016.11.017. Epub 2016 Nov 25.
10
Transcriptomic profiling reveals MEP pathway contributing to ginsenoside biosynthesis in Panax ginseng.转录组分析揭示了 MEP 途径在人参中参与人参皂苷生物合成的作用。
BMC Genomics. 2019 May 17;20(1):383. doi: 10.1186/s12864-019-5718-x.

引用本文的文献

1
Transcriptome and genome-wide analysis of the mango glycosyltransferase family involved in mangiferin biosynthesis.参与芒果苷生物合成的芒果糖基转移酶家族的转录组和全基因组分析。
BMC Genomics. 2024 Nov 12;25(1):1074. doi: 10.1186/s12864-024-10998-5.
2
A Novel Biosynthetic Strategy for Ginsenoside Ro: Construction of a Metabolically Engineered Strain Using a Newly Identified UGAT Gene from as the Key Enzyme Gene and Optimization of Fermentation Conditions.一种新型的人参皂苷 Ro 生物合成策略:利用从 中鉴定的新型 UGAT 基因作为关键酶基因构建代谢工程菌,并优化发酵条件。
Int J Mol Sci. 2024 Oct 21;25(20):11331. doi: 10.3390/ijms252011331.

本文引用的文献

1
Small RNA-Seq to Unveil the miRNA Expression Patterns and Identify the Target Genes in .通过小RNA测序揭示微小RNA表达模式并鉴定……中的靶基因
Plants (Basel). 2023 Aug 27;12(17):3070. doi: 10.3390/plants12173070.
2
Genetic and molecular dissection of ginseng ( Mey.) germplasm using high-density genic SNP markers, secondary metabolites, and gene expressions.利用高密度基因SNP标记、次生代谢产物和基因表达对人参(Mey.)种质进行遗传和分子剖析。
Front Plant Sci. 2023 Jul 28;14:1165349. doi: 10.3389/fpls.2023.1165349. eCollection 2023.
3
Genome-wide analysis of Panax MADS-box genes reveals role of PgMADS41 and PgMADS44 in modulation of root development and ginsenoside synthesis.
人参MADS-box基因的全基因组分析揭示了PgMADS41和PgMADS44在调节根系发育和人参皂苷合成中的作用。
Int J Biol Macromol. 2023 Apr 1;233:123648. doi: 10.1016/j.ijbiomac.2023.123648. Epub 2023 Feb 11.
4
Regulatory network of ginsenoside biosynthesis under Ro stress in the hairy roots of revealed by RNA sequencing.RNA测序揭示了人参发根在Ro胁迫下人参皂苷生物合成的调控网络。
Front Bioeng Biotechnol. 2022 Oct 31;10:1006386. doi: 10.3389/fbioe.2022.1006386. eCollection 2022.
5
Transcriptome analysis of MYB transcription factors family and PgMYB genes involved in salt stress resistance in Panax ginseng.人参 MYB 转录因子家族和 PgMYB 基因的转录组分析与耐盐性有关。
BMC Plant Biol. 2022 Oct 8;22(1):479. doi: 10.1186/s12870-022-03871-8.
6
Reshuffling of the ancestral core-eudicot genome shaped chromatin topology and epigenetic modification in Panax.祖先核心真双子叶植物基因组的重排塑造了人参的染色质拓扑结构和表观遗传修饰。
Nat Commun. 2022 Apr 7;13(1):1902. doi: 10.1038/s41467-022-29561-5.
7
Biosynthesis of Oleanane-Type Ginsenosides in Using Two Types of Glycosyltransferases from .利用 中的两种糖基转移酶合成齐墩果烷型人参皂苷。
J Agric Food Chem. 2022 Feb 23;70(7):2231-2240. doi: 10.1021/acs.jafc.1c07526. Epub 2022 Feb 11.
8
Molecular Cloning and Identification of NADPH Cytochrome P450 Reductase from .从.中克隆和鉴定 NADPH 细胞色素 P450 还原酶。
Molecules. 2021 Nov 3;26(21):6654. doi: 10.3390/molecules26216654.
9
Basic leucine zipper (bZIP) transcription factor genes and their responses to drought stress in ginseng, Panax ginseng C.A. Meyer.人参(Panax ginseng C.A. Meyer)中碱性亮氨酸拉链(bZIP)转录因子基因及其对干旱胁迫的响应
BMC Genomics. 2021 May 1;22(1):316. doi: 10.1186/s12864-021-07624-z.
10
Ginsenoside Ro Ameliorates High-Fat Diet-Induced Obesity and Insulin Resistance in Mice via Activation of the G Protein-Coupled Bile Acid Receptor 5 Pathway.人参皂苷 Ro 通过激活 G 蛋白偶联胆酸受体 5 通路改善高脂饮食诱导的肥胖和胰岛素抵抗。
J Pharmacol Exp Ther. 2021 Jun;377(3):441-451. doi: 10.1124/jpet.120.000435. Epub 2021 Apr 5.