Division of Genetics and Genomics, Manton Center for Orphan Disease Research, Department of Pediatrics, and Howard Hughes Medical Institute, Boston Children's Hospital, Boston, MA 02115, USA; Departments of Pediatrics and Neurology, Harvard Medical School, Boston, MA 02115, USA; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Department of Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA.
Cell. 2024 Apr 11;187(8):1955-1970.e23. doi: 10.1016/j.cell.2024.02.025. Epub 2024 Mar 18.
Characterizing somatic mutations in the brain is important for disentangling the complex mechanisms of aging, yet little is known about mutational patterns in different brain cell types. Here, we performed whole-genome sequencing (WGS) of 86 single oligodendrocytes, 20 mixed glia, and 56 single neurons from neurotypical individuals spanning 0.4-104 years of age and identified >92,000 somatic single-nucleotide variants (sSNVs) and small insertions/deletions (indels). Although both cell types accumulate somatic mutations linearly with age, oligodendrocytes accumulated sSNVs 81% faster than neurons and indels 28% slower than neurons. Correlation of mutations with single-nucleus RNA profiles and chromatin accessibility from the same brains revealed that oligodendrocyte mutations are enriched in inactive genomic regions and are distributed across the genome similarly to mutations in brain cancers. In contrast, neuronal mutations are enriched in open, transcriptionally active chromatin. These stark differences suggest an assortment of active mutagenic processes in oligodendrocytes and neurons.
对大脑中的体细胞突变进行特征分析对于厘清衰老的复杂机制非常重要,但对于不同脑细胞类型的突变模式知之甚少。在这里,我们对来自神经正常个体的 86 个单个少突胶质细胞、20 个混合神经胶质细胞和 56 个单个神经元进行了全基因组测序(WGS),这些个体的年龄范围为 0.4-104 岁,共鉴定出超过 92,000 个体细胞单核苷酸变异(sSNVs)和小插入/缺失(indels)。尽管这两种细胞类型的体细胞突变都随年龄呈线性积累,但少突胶质细胞的 sSNVs 积累速度比神经元快 81%,而 indels 积累速度比神经元慢 28%。对来自同一大脑的单细胞 RNA 图谱和染色质可及性的突变进行相关性分析表明,少突胶质细胞的突变富集于非活性基因组区域,并且与脑癌中的突变在基因组中分布相似。相比之下,神经元的突变富集于开放的、转录活跃的染色质。这些明显的差异表明,少突胶质细胞和神经元中存在一系列活跃的致突变过程。