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基于蛋白质表面电荷的计算机辅助理性设计策略,提高新型耐热酯酶的热稳定性。

Computer-aided rational design strategy based on protein surface charge to improve the thermal stability of a novel esterase from Geobacillus jurassicus.

机构信息

State Key Laboratory of Bioreactor Engineering, Newworld Institute of Biotechnology, East China University of Science and Technology, 130 Meilong Road, 200237, Shanghai, People's Republic of China.

School of Chemical and Environmental Engineering, Shanghai Institute of Technology, Shanghai, 201418, People's Republic of China.

出版信息

Biotechnol Lett. 2024 Jun;46(3):443-458. doi: 10.1007/s10529-024-03473-4. Epub 2024 Mar 25.

Abstract

OBJECTIVES

Although Geobacillus are significant thermophilic bacteria source, there are no reports of thermostable esterase gene in Geobacillus jurassicus or rational design strategies to increase the thermal stability of esterases.

RESULTS

Gene gju768 showed a highest similarity of 15.20% to esterases from Geobacillus sp. with detail enzymatic properties. Using a combination of Gibbs Unfolding Free Energy (∆∆G) calculator and the distance from the mutation site to the catalytic site (Ds) to screen suitable mutation sites with elimination of negative surface charge, the mutants (D24N, E221Q, and E253Q) displayed stable mutants with higher thermal stability than the wild-type (WT). Mutant E253Q exhibited the best thermal stability, with a half-life (T) at 65 °C of 32.4 min, which was 1.8-fold of the WT (17.9 min).

CONCLUSION

Cloning of gene gju768 and rational design based on surface charge engineering contributed to the identification of thermostable esterase from Geobacillus sp. and the exploration of evolutionary strategies for thermal stability.

摘要

目的

尽管芽胞杆菌是重要的嗜热细菌来源,但目前尚未有关于杰氏芽胞杆菌中耐热酯酶基因的报道,也没有合理的设计策略来提高酯酶的热稳定性。

结果

基因 gju768 与来自芽胞杆菌属的酯酶具有 15.20%的最高相似性,具有详细的酶学特性。使用 Gibbs 解折叠自由能(∆∆G)计算器和突变位点到催化位点的距离(Ds)的组合,筛选出具有消除负表面电荷的合适突变位点,突变体(D24N、E221Q 和 E253Q)显示出比野生型(WT)更稳定的突变体,具有更高的热稳定性。突变体 E253Q 表现出最佳的热稳定性,在 65°C 下的半衰期(T)为 32.4 分钟,是 WT(17.9 分钟)的 1.8 倍。

结论

gju768 基因的克隆和基于表面电荷工程的合理设计有助于鉴定来自芽胞杆菌属的耐热酯酶,并探索热稳定性的进化策略。

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