Leblebici Asim, Sancar Ceren, Tercan Bahar, Isik Zerrin, Arayici Mehmet Emin, Ellidokuz Ender Berat, Basbinar Yasemin, Yildirim Nuri
Department of Translational Oncology, Institute of Health Sciences, Dokuz Eylul University, 35340 Izmir, Turkey.
Department of Gynecology and Obstetrics, Faculty of Medicine, Ege University, 35340 Izmir, Turkey.
Curr Issues Mol Biol. 2024 Feb 26;46(3):1777-1798. doi: 10.3390/cimb46030117.
This paper aims to elucidate the differentially coexpressed genes, their potential mechanisms, and possible drug targets in low-grade invasive serous ovarian carcinoma (LGSC) in terms of the biologic continuity of normal, borderline, and malignant LGSC. We performed a bioinformatics analysis, integrating datasets generated using the GPL570 platform from different studies from the GEO database to identify changes in this transition, gene expression, drug targets, and their relationships with tumor microenvironmental characteristics. In the transition from ovarian epithelial cells to the serous borderline, the FGFR3 gene in the "Estrogen Response Late" pathway, the ITGB2 gene in the "Cell Adhesion Molecule", the CD74 gene in the "Regulation of Cell Migration", and the IGF1 gene in the "Xenobiotic Metabolism" pathway were upregulated in the transition from borderline to LGSC. The ERBB4 gene in "Proteoglycan in Cancer", the AR gene in "Pathways in Cancer" and "Estrogen Response Early" pathways, were upregulated in the transition from ovarian epithelial cells to LGSC. In addition, SPP1 and ITGB2 genes were correlated with macrophage infiltration in the LGSC group. This research provides a valuable framework for the development of personalized therapeutic approaches in the context of LGSC, with the aim of improving patient outcomes and quality of life. Furthermore, the main goal of the current study is a preliminary study designed to generate in silico inferences, and it is also important to note that subsequent in vitro and in vivo studies will be necessary to confirm the results before considering these results as fully reliable.
本文旨在从低度浸润性浆液性卵巢癌(LGSC)的正常、交界性和恶性的生物学连续性方面,阐明其差异共表达基因、潜在机制及可能的药物靶点。我们进行了一项生物信息学分析,整合了使用GPL570平台从GEO数据库的不同研究中生成的数据集,以识别这种转变过程中的变化、基因表达、药物靶点及其与肿瘤微环境特征的关系。在从卵巢上皮细胞向浆液性交界性肿瘤的转变过程中,“雌激素反应晚期”途径中的FGFR3基因、“细胞黏附分子”中的ITGB2基因、“细胞迁移调控”中的CD74基因以及“外源性物质代谢”途径中的IGF1基因在从交界性肿瘤向LGSC的转变中上调。“癌症中的蛋白聚糖”中的ERBB4基因、“癌症途径”和“雌激素早期反应”途径中的AR基因在从卵巢上皮细胞向LGSC的转变中上调。此外,SPP1和ITGB2基因与LGSC组中的巨噬细胞浸润相关。本研究为LGSC背景下个性化治疗方法的开发提供了有价值的框架,旨在改善患者预后和生活质量。此外,当前研究的主要目标是一项旨在生成计算机模拟推断的初步研究,还需要注意的是,在将这些结果视为完全可靠之前,后续的体外和体内研究对于确认结果是必要的。