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我们从非产氧嗜光细菌的同源二聚体 I 型反应中心-光系统的不同结构中学到了什么。

What We Are Learning from the Diverse Structures of the Homodimeric Type I Reaction Center-Photosystems of Anoxygenic Phototropic Bacteria.

机构信息

Department of Molecular Biology and Biochemistry and Rutgers Climate and Energy Institute, Rutgers University, Piscataway, NJ 08854-8082, USA.

出版信息

Biomolecules. 2024 Mar 6;14(3):311. doi: 10.3390/biom14030311.

DOI:10.3390/biom14030311
PMID:38540731
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10968294/
Abstract

A Type I reaction center (RC) (Fe-S type, ferredoxin reducing) is found in several phyla containing anoxygenic phototrophic bacteria. These include the heliobacteria (HB), the green sulfur bacteria (GSB), and the chloracidobacteria (CB), for which high-resolution homodimeric RC-photosystem (PS) structures have recently appeared. The 2.2-Å X-ray structure of the RC-PS of revealed that the core PshA apoprotein (PshA-1 and PshA-2 homodimeric pair) exhibits a structurally conserved PSI arrangement comprising five C-terminal transmembrane α-helices (TMHs) forming the RC domain and six N-terminal TMHs coordinating the light-harvesting (LH) pigments. The structure lacked quinone molecules, indicating that electrons were transferred directly from the A (8-OH-chlorophyll (Chl) ) acceptor to the F [4Fe-4S] component, serving as the terminal RC acceptor. A pair of additional TMHs designated as Psh X were also found that function as a low-energy antenna. The 2.5-Å resolution cryo-electron microscopy (cryo-EM) structure for the RC-PS of the green sulfur bacterium included a pair of Fenna-Matthews-Olson protein (FMO) antennae, which transfer excitations from the chlorosomes to the RC-PS (PscA-1 and PscA-2) core. A pair of cytochromes (PscC) molecules was also revealed, acting as electron donors to the RC bacteriochlorophyll (BChl) ' special pair, as well as PscB, housing the [4Fe-4S] cluster F and F, and the associated PscD protein. While the FMO components were missing from the 2.6-Å cryo-EM structure of the Zn- (BChl) ' special pair containing RC-PS of , a unique architecture was revealed that besides the (PscA) core, consisted of seven additional subunits including PscZ in place of PscD, the PscX and PscY cytochrome serial electron donors and four low mol. wt. subunits of unknown function. Overall, these diverse structures have revealed that (i) the HB RC-PS is the simplest light-energy transducing complex yet isolated and represents the closest known homolog to a common homodimeric RC-PS ancestor; (ii) the symmetrically localized Ca-binding sites found in each of the Type I homodimeric RC-PS structures likely gave rise to the analogously positioned MnCaO cluster of the PSII RC and the Tyr RC donor site; (iii) a close relationship between the GSB RC-PS and the PSII Chl proteins (CP)43 and CP47 was demonstrated by their strongly conserved LH-(B)Chl localizations; (iv) LH-BChls of the GSB-RC-PS are also localized in the conserved RC-associated positions of the PSII Chl and Chl sites; (v) glycosylated carotenoids of the GSB RC-PS are located in the homologous carotenoid-containing positions of PSII, reflecting an O-tolerance mechanism capable of sustaining early stages in the evolution of oxygenic photosynthesis. In addition to the close relationships found between the homodimeric RC-PS and PSII, duplication of the gene encoding the ancestral Type I RC apoprotein, followed by genetic divergence, may well account for the appearance of the heterodimeric Type I and Type II RCs of the extant oxygenic phototrophs. Accordingly, the long-held view that PSII arose from the anoxygenic Type II RC is now found to be contrary to the new evidence provided by Type I RC-PS homodimer structures, indicating that the evolutionary origins of anoxygenic Type II RCs, along with their distinct antenna rings are likely to have been preceded by the events that gave rise to their oxygenic counterparts.

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7738/10968294/1f0b835485de/biomolecules-14-00311-g010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7738/10968294/dfba7f8c7033/biomolecules-14-00311-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7738/10968294/30c7494af7cb/biomolecules-14-00311-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7738/10968294/ee3312a96a84/biomolecules-14-00311-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7738/10968294/67d496d3a4cd/biomolecules-14-00311-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7738/10968294/8c63f3ab01bf/biomolecules-14-00311-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7738/10968294/b88c9ea2974f/biomolecules-14-00311-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7738/10968294/27e01f81abbb/biomolecules-14-00311-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7738/10968294/d930421e1a54/biomolecules-14-00311-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7738/10968294/aa1e2642916b/biomolecules-14-00311-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7738/10968294/1f0b835485de/biomolecules-14-00311-g010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7738/10968294/dfba7f8c7033/biomolecules-14-00311-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7738/10968294/30c7494af7cb/biomolecules-14-00311-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7738/10968294/ee3312a96a84/biomolecules-14-00311-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7738/10968294/67d496d3a4cd/biomolecules-14-00311-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7738/10968294/8c63f3ab01bf/biomolecules-14-00311-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7738/10968294/b88c9ea2974f/biomolecules-14-00311-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7738/10968294/27e01f81abbb/biomolecules-14-00311-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7738/10968294/d930421e1a54/biomolecules-14-00311-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7738/10968294/aa1e2642916b/biomolecules-14-00311-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7738/10968294/1f0b835485de/biomolecules-14-00311-g010.jpg
摘要

I 型反应中心(RC)(Fe-S 型,铁氧还蛋白还原)存在于包含厌氧光合细菌的几个门中。这些包括蓝细菌(HB)、绿硫细菌(GSB)和氯细菌(CB),最近出现了高分辨率同源二聚体 RC-光系统(PS)结构。[1] 揭示的 RC-PS 的 2.2 Å X 射线结构表明,核心 PshA 脱辅基蛋白(PshA-1 和 PshA-2 同源二聚体对)表现出结构保守的 PSI 排列,包括五个 C 端跨膜 α-螺旋(TMHs),形成 RC 结构域和六个 N 端 TMHs 配位光捕获(LH)色素。[1] 结构缺乏醌分子,表明电子直接从 A(8-OH-叶绿素(Chl))受体转移到 F [4Fe-4S] 组件,作为终端 RC 受体。还发现了一对指定为 Psh X 的额外 TMHs,它们作为低能天线起作用。[2] 绿硫细菌 RC-PS 的 2.5 Å 分辨率冷冻电子显微镜(cryo-EM)结构包括一对 Fenna-Matthews-Olson 蛋白(FMO)天线,它们将激发从叶绿素体转移到 RC-PS(PscA-1 和 PscA-2)核心。[2] 还揭示了一对细胞色素(PscC)分子,作为 RC 细菌叶绿素(BChl)“特殊对”的电子供体,以及 PscB,容纳[4Fe-4S]簇 F 和 F,以及相关的 PscD 蛋白。[2] 虽然 2.6 Å 的 cryo-EM 结构中缺少 FMO 组件,但锌-(BChl)“特殊对”含有 RC-PS 的结构揭示了一种独特的架构,除了(PscA)核心外,还包括七个额外的亚基,包括 PscZ 代替 PscD、PscX 和 PscY 细胞色素串联电子供体和四个未知功能的低分子量亚基。总的来说,这些不同的结构表明:(i)HB RC-PS 是迄今为止分离出的最简单的光能转导复合物,代表了与同源二聚体 RC-PS 祖先最接近的已知同源物;(ii)在每种 I 型同源二聚体 RC-PS 结构中发现的对称定位的 Ca 结合位点可能起源于 PSII RC 的类似定位的 MnCaO 簇和 Tyr RC 供体位点;(iii)GSB RC-PS 与 PSII Chl 蛋白(CP)43 和 CP47 之间的密切关系通过它们强烈保守的 LH-(B)Chl 定位得到证明;(iv)GSB-RC-PS 的 LH-BChls 也定位于 PSII 的保守 RC 相关位置的 Chl 和 Chl 位点;(v)GSB RC-PS 的糖基化类胡萝卜素位于 PSII 同源含类胡萝卜素的位置,反映了一种 O 耐受性机制,能够在有氧光合作用的进化早期维持。除了在同源二聚体 RC-PS 和 PSII 之间发现的密切关系外,编码祖先 I 型 RC 脱辅基蛋白的基因的复制,随后发生遗传分化,很可能解释了现存的有氧光合生物中异源二聚体 I 型和 II 型 RC 的出现。相应地,PSII 起源于厌氧 II 型 RC 的长期观点现在与 I 型 RC-PS 同源二聚体结构提供的新证据相矛盾,表明厌氧 II 型 RC 的进化起源以及它们独特的天线环很可能是有氧对应物出现的先验事件的结果。

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