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比较线粒体基因组分析揭示了 种复合体(真菌:)的进化分歧。

Comparative Mitogenomics Analysis Revealed Evolutionary Divergence among Species Complex (Fungi: ).

机构信息

Key Laboratory of Green Prevention and Control of Tropical Plant Diseases and Pests, Ministry of Education, School of Tropical Agriculture and Forestry, Hainan University, Haikou 570228, China.

出版信息

Int J Mol Sci. 2024 Mar 7;25(6):3093. doi: 10.3390/ijms25063093.

Abstract

The genus consists of obligate parasites that cause ring spot, scab, and leaf blight diseases in higher plant species. We assembled the three complete mitogenomes for the guava fruit ring spot pathogen, . The mitogenomes are circular, with sizes of 38,666 bp, 33,846 bp, and 32,593 bp. The comparative analyses with showed that differs greatly from it in the length of the mitogenomes and the number of introns. Moreover, they showed significant differences in the gene content and tRNAs. The two genera showed little difference in gene skewness and codon preference for core protein-coding genes (PCGs). We compared gene sequencing in the mitogenomes of the order and found large-scale gene rearrangement events, such as gene translocations and the duplication of tRNAs. shows a unique evolutionary position in the phylum constructed in phylogenetic analyses. We also found a more concentrated distribution of evolutionary pressures on the PCGs of in the phylum and that they are under little selective pressure compared to other species and are subjected to purifying selection. This study explores the evolutionary dynamics of the mitogenomes of and provides important support for genetic and taxonomic studies.

摘要

该属由专性寄生菌组成,可引起高等植物的环斑、痂和叶枯病。我们为番石榴果实环斑病病原体组装了三个完整的线粒体基因组。线粒体基因组是圆形的,大小分别为 38666bp、33846bp 和 32593bp。与 比较分析表明,在线粒体基因组的长度和内含子数量上,两者有很大的不同。此外,它们在基因内容和 tRNA 上也有显著差异。这两个属在核心蛋白编码基因(PCG)的基因偏斜和密码子偏好方面差异不大。我们比较了目内的线粒体基因组的基因测序,发现了大规模的基因重排事件,如基因易位和 tRNA 的重复。在系统发育分析中构建的门中, 显示出独特的进化地位。我们还发现,在门中,PCG 上的进化压力更为集中,与其他物种相比,它们受到的选择压力较小,受到纯化选择的影响。本研究探讨了 线粒体基因组的进化动态,为遗传和分类学研究提供了重要支持。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d138/10970013/a63543e7e648/ijms-25-03093-g001.jpg

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