Suppr超能文献

基于全基因组序列对乌鲁木齐市耐药菌耐药特征、遗传多样性及传播动力学的分析

Whole Genome Sequence-Based Analyses of Drug Resistance Characteristics, Genetic Diversity, and Transmission Dynamics of Drug-Resistant in Urumqi City.

作者信息

Yang Jiandong, Lu Yaoqin, Chen Yanggui, Wang Yida, Wang Kai

机构信息

School of Public Health, Xinjiang Medical University, Urumqi, 830017, People's Republic of China.

Department of Tuberculosis Control and Prevention, Urumqi Center for Disease Control and Prevention, Urumqi, 830026, People's Republic of China.

出版信息

Infect Drug Resist. 2024 Mar 23;17:1161-1169. doi: 10.2147/IDR.S454913. eCollection 2024.

Abstract

OBJECTIVE

This study aims to analyze the drug resistance spectrum, genetic diversity, and transmission dynamics to provide a basis for the prevention and control of drug-resistant (DR) tuberculosis (TB) epidemics.

METHODS

This retrospective study is based on routine national drug resistance surveillance. The demographic, epidemiological, and clinical information on DR-TB patients from 2016 to 2021 was collected and used for phenotypic drug susceptibility testing and whole-genome sequencing.

RESULTS

It was indicated that L2.2.1 was the dominant lineage in Urumqi. The drug resistance spectrum in Urumqi was narrow, which means more drug combinations can be used for clinical treatment. Furthermore, mutations identification of drug-resistance gene and are important for clinical drug use. However, mutations in cross-resistance genes have limited guidance for clinical selection of KM, CPM and AK. Moreover, there is an increased risk of cluster transmission of DR-TB, and the difference in clustering rate among L2, L3, and L4 was not statistically significant ( = 2.6410, = 0.2670).

CONCLUSION

In the Urumqi, DR-TB has a complex prevalence state, a narrow drug resistance spectrum, and a high clustering rate and burden of drug resistance. To reduce the burden of DR-TB, related research should be strengthened, and the development of prevention, control, and treatment strategies should be accelerated.

摘要

目的

本研究旨在分析耐药谱、遗传多样性和传播动态,为耐药结核病(TB)流行的预防和控制提供依据。

方法

本回顾性研究基于全国常规耐药监测。收集了2016年至2021年耐药结核病患者的人口统计学、流行病学和临床信息,并用于表型药物敏感性试验和全基因组测序。

结果

结果表明,L2.2.1是乌鲁木齐的主要谱系。乌鲁木齐的耐药谱较窄,这意味着更多的药物组合可用于临床治疗。此外,耐药基因和的突变鉴定对临床用药很重要。然而,交叉耐药基因的突变对卡那霉素(KM)、卷曲霉素(CPM)和阿米卡星(AK)的临床选择指导有限。此外,耐药结核病存在聚集性传播风险增加的情况,L2、L3和L4之间的聚集率差异无统计学意义(=2.6410,=0.2670)。

结论

在乌鲁木齐,耐药结核病呈现复杂的流行状态,耐药谱较窄,聚集率和耐药负担较高。为减轻耐药结核病负担,应加强相关研究,加快预防、控制和治疗策略的制定。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca37/10967994/f6dabe03f2ab/IDR-17-1161-g0001.jpg

相似文献

3
Characterization of Fluoroquinolone-Resistant and Multidrug-Resistant Isolates Using Whole-Genome Sequencing in Tianjin, China.
Infect Drug Resist. 2022 Apr 13;15:1793-1803. doi: 10.2147/IDR.S361635. eCollection 2022.
6
Whole Genomic Analysis Revealed High Genetic Diversity and Drug-Resistant Characteristics of in Guangxi, China.
Infect Drug Resist. 2023 Aug 3;16:5021-5031. doi: 10.2147/IDR.S410828. eCollection 2023.
7
Whole Genome Sequencing of Drug Resistant and Drug Susceptible Isolates From Tigray Region, Ethiopia.
Front Microbiol. 2021 Dec 6;12:743198. doi: 10.3389/fmicb.2021.743198. eCollection 2021.
8
[Analysis on drug resistance-associated mutations of multi-drug resistant based on whole-genome sequencing in China].
Zhonghua Liu Xing Bing Xue Za Zhi. 2020 May 10;41(5):770-775. doi: 10.3760/cma.j.cn112338-20191111-00800.
9
Multidrug-resistant Mycobacterium tuberculosis transmission in Shandong, China.
Medicine (Baltimore). 2024 Mar 22;103(12):e37617. doi: 10.1097/MD.0000000000037617.
10
Whole genome sequencing to complement tuberculosis drug resistance surveys in Uganda.
Infect Genet Evol. 2016 Jun;40:8-16. doi: 10.1016/j.meegid.2016.02.019. Epub 2016 Feb 23.

引用本文的文献

1
Integrating genomic and spatial analyses to describe tuberculosis transmission: a scoping review.
Lancet Microbe. 2025 Aug;6(8):101094. doi: 10.1016/j.lanmic.2025.101094. Epub 2025 Apr 11.

本文引用的文献

1
Gender and Drug-Resistant Tuberculosis in Nigeria.
Trop Med Infect Dis. 2023 Feb 6;8(2):104. doi: 10.3390/tropicalmed8020104.
4
Towards reliable whole genome sequencing for outbreak preparedness and response.
BMC Genomics. 2022 Aug 9;23(1):569. doi: 10.1186/s12864-022-08749-5.
5
Drug resistant TB - latest developments in epidemiology, diagnostics and management.
Int J Infect Dis. 2022 Nov;124 Suppl 1:S20-S25. doi: 10.1016/j.ijid.2022.03.026. Epub 2022 Mar 25.
8
Infection prevention and control insights from a decade of pathogen whole-genome sequencing.
J Hosp Infect. 2022 Apr;122:180-186. doi: 10.1016/j.jhin.2022.01.024. Epub 2022 Feb 12.
9
The impact of COVID-19 on tuberculosis: challenges and opportunities.
Ther Adv Infect Dis. 2021 Jun 9;8:20499361211016973. doi: 10.1177/20499361211016973. eCollection 2021 Jan-Dec.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验