Antoniolli Henrique R M, Pita Sebastián, Deprá Maríndia, Valente Vera L S
Universidade Federal do Rio Grande do Sul (UFRGS), Laboratório de Drosophila, Programa de Pós-Graduação em Genética e Biologia Molecular, Porto Alegre, RS, Brazil.
Universidad de la República (UdelaR), Facultad de Ciencias, Sección Genética Evolutiva, Montevideo, Uruguay.
Genet Mol Biol. 2024 Mar 29;46(3 Suppl 1):e20230143. doi: 10.1590/1678-4685-GMB-2023-0143. eCollection 2024.
Galileo is a transposon notoriously involved with inversions in Drosophila buzzatii by ectopic recombination. Although widespread in Drosophila, little is known about this transposon in other lineages of Drosophilidae. Here, the abundance of the canonical Galileo and its evolutionary history in Drosophilidae genomes was estimated and reconstructed across genera within its two subfamilies. Sequences of this transposon were masked in these genomes and their transposase sequences were recovered using BLASTn. Phylogenetic analyses were employed to reconstruct their evolutionary history and compare it to that of host genomes. Galileo was found in nearly all 163 species, however, only 37 harbored nearly complete transposase sequences. In the remaining, Galileo was found highly fragmented. Copies from related species were clustered, however horizontal transfer events were detected between the melanogaster and montium groups of Drosophila, and between the latter and the Lordiphosa genus. The similarity of sequences found in the virilis and willistoni groups of Drosophila was found to be a consequence of lineage sorting. Therefore, the evolution of Galileo is primarily marked by vertical transmission and long-term inactivation, mainly through the deletion of open reading frames. The latter has the potential to lead copies of this transposon to become miniature inverted-repeat transposable elements.
伽利略是一种转座子,因异位重组而与巴氏果蝇的倒位密切相关。尽管它在果蝇中广泛存在,但在果蝇科的其他谱系中对这种转座子却知之甚少。在此,我们估计并重建了果蝇科基因组中典型伽利略转座子的丰度及其进化历史,涵盖了其两个亚科内的各个属。该转座子的序列在这些基因组中被屏蔽,其转座酶序列通过BLASTn检索得到。利用系统发育分析来重建其进化历史,并将其与宿主基因组的进化历史进行比较。在几乎所有163个物种中都发现了伽利略转座子,然而,只有37个物种含有近乎完整的转座酶序列。在其余物种中,伽利略转座子高度碎片化。相关物种的拷贝聚类在一起,不过在果蝇的黑腹果蝇组和山果蝇组之间,以及后者与洛氏果蝇属之间检测到了水平转移事件。果蝇的粗壮果蝇组和威氏果蝇组中发现的序列相似性是谱系分选的结果。因此,伽利略转座子的进化主要以垂直传递和长期失活为特征,主要是通过开放阅读框的缺失。后者有可能导致该转座子的拷贝成为微型反向重复转座元件。